Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_N01
         (855 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   4.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   6.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   6.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   8.3  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 354 YHHHGHAEFGRQHVQY 307
           +HHH H     QH+ Y
Sbjct: 351 HHHHHHQTQSLQHLHY 366


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 82  SEAIPLKYTLIAVIKTIRHATEV*KAS 2
           SE++PL+  L A ++T    TE+  AS
Sbjct: 803 SESMPLQSALTAAVQTSVGVTEISLAS 829


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 82  SEAIPLKYTLIAVIKTIRHATEV*KAS 2
           SE++PL+  L A ++T    TE+  AS
Sbjct: 893 SESMPLQSALTAAVQTSVGVTEISLAS 919


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 366 GQGAFGNMCRGGRMFAP 416
           G G FG++CRG     P
Sbjct: 640 GGGEFGDVCRGKLKLPP 656


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,531
Number of Sequences: 438
Number of extensions: 3625
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)