Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_N01
         (855 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...   219   3e-57
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...   219   3e-57
At2g43680.2 68415.m05430 calmodulin-binding family protein simil...    30   1.7  
At2g43680.1 68415.m05429 calmodulin-binding family protein simil...    30   1.7  
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp...    29   3.9  
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp...    29   3.9  
At1g26400.1 68414.m03220 FAD-binding domain-containing protein s...    28   6.9  
At1g18670.1 68414.m02330 protein kinase family protein contains ...    28   6.9  
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr...    28   9.1  

>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score =  219 bits (534), Expect = 3e-57
 Identities = 103/177 (58%), Positives = 120/177 (67%)
 Frame = +3

Query: 183 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 362
           V  AP+RPD+VN VH  +S NSRQPY VSK+AGHQTSAESWGTGRAV+RIPRV GGGTHR
Sbjct: 33  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHR 92

Query: 363 SGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEK 542
           +GQ AFGNMCRGGRMFAPTK WRRWH                          ARGH IE 
Sbjct: 93  AGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIEN 152

Query: 543 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIS 713
           +PE+PLVV+D  + + KT  A+  L+++ A+ D  K   S  +R GKGKMRNRR IS
Sbjct: 153 VPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYIS 209


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score =  219 bits (534), Expect = 3e-57
 Identities = 103/177 (58%), Positives = 120/177 (67%)
 Frame = +3

Query: 183 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 362
           V  AP+RPD+VN VH  +S NSRQPY VSK+AGHQTSAESWGTGRAV+RIPRV GGGTHR
Sbjct: 32  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHR 91

Query: 363 SGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEK 542
           +GQ AFGNMCRGGRMFAPTK WRRWH                          ARGH IE 
Sbjct: 92  AGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIEN 151

Query: 543 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIS 713
           +PE+PLVV+D  + + KT  A+  L+++ A+ D  K   S  +R GKGKMRNRR IS
Sbjct: 152 VPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYIS 208


>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 669

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = +2

Query: 395 WWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTHY*KDSRASLGCSRQ 574
           WW +V     LA+ APS   P  +  L  SR C   P ++S  + H   D+       R 
Sbjct: 465 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC-PSPLSQSSKQHHIRLDNHFDTSTPRS 523

Query: 575 S 577
           S
Sbjct: 524 S 524


>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 668

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = +2

Query: 395 WWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTHY*KDSRASLGCSRQ 574
           WW +V     LA+ APS   P  +  L  SR C   P ++S  + H   D+       R 
Sbjct: 464 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC-PSPLSQSSKQHHIRLDNHFDTSTPRS 522

Query: 575 S 577
           S
Sbjct: 523 S 523


>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 844

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 411 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQH 292
           R++ H    + +H D +  E+HHH H    R+H     ++H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775


>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 843

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 411 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQH 292
           R++ H    + +H D +  E+HHH H    R+H     ++H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775


>At1g26400.1 68414.m03220 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 527

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -3

Query: 601 CLVLLISWTLSATTKGSSGIFS 536
           CLVLL+S   +A TK  SGIF+
Sbjct: 9   CLVLLVSILRAAVTKPDSGIFT 30


>At1g18670.1 68414.m02330 protein kinase family protein contains
           Protein kinases ATP-binding region signature,
           PROSITE:PS00107 and Serine/Threonine protein kinases
           active-site signature, PROSITE:PS00108
          Length = 662

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +2

Query: 512 RSG*RTHY*KDSRASLGCSRQSPRDQQDQTGCHLPEAPQGMV*YP*GVQVSASS 673
           R+G   H   DS ++L    Q P + +     H+  A QG V +   +QVS SS
Sbjct: 491 RNGHSVHNSIDSDSTLFEKMQKPSNHEKDEASHVKNASQGDVPFSGPLQVSVSS 544


>At5g17650.1 68418.m02069 glycine/proline-rich protein
           glycine/proline-rich protein GPRP - Arabidopsis
           thaliana, EMBL:X84315
          Length = 173

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 399 HHDTCYRRHPDRTYEYHHHGHAEF 328
           HH   Y  H    Y Y +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,491,827
Number of Sequences: 28952
Number of extensions: 310449
Number of successful extensions: 1026
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)