Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_M24
         (1041 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0581 - 20785198-20785962,20786107-20786649                       31   2.0  
12_02_0537 + 20126176-20127154,20127398-20127624                       29   4.6  

>12_02_0581 - 20785198-20785962,20786107-20786649
          Length = 435

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = +2

Query: 98  RSVVIKCRRLILFCYQFLLTCA----IASAAECENATSLSLMIDSLLRNVRXGVXPRTP 262
           RS++ KC+ L   C  F+L       I  A  C N  S+SL ++ L      G   RTP
Sbjct: 208 RSLLGKCKSLEKLCLHFILGLTDSDMITLAQNCSNLRSISLQLEPLFCEGPEGRVFRTP 266


>12_02_0537 + 20126176-20127154,20127398-20127624
          Length = 401

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = +2

Query: 98  RSVVIKCRRLILFCYQFLLTCA----IASAAECENATSLSLMIDSLLRNVRXGVXPRTP 262
           RS++ KC+ L   C  F+L       I  A  C N  S+SL ++ +      G   RTP
Sbjct: 256 RSLLGKCKSLEKLCLHFVLGLTDSDMITLAQNCSNLRSISLQLEPVFCEGPEGRVCRTP 314


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,203,337
Number of Sequences: 37544
Number of extensions: 154846
Number of successful extensions: 207
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3071102548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)