Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_M23
(887 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-l... 236 5e-61
UniRef50_Q8UZB5 Cluster: Coat protein; n=1; Grapevine fleck viru... 91 5e-17
UniRef50_Q71EB5 Cluster: 25kDa coat protein; n=1; Grapevine Red ... 84 5e-15
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 75 2e-12
UniRef50_P20124 Cluster: Coat protein; n=10; Tymovirus|Rep: Coat... 71 4e-11
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 64 3e-09
UniRef50_P35927 Cluster: Coat protein; n=2; Erysimum latent viru... 61 3e-08
UniRef50_Q8QY74 Cluster: Coat protein; n=1; Passion fruit yellow... 61 4e-08
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 59 1e-07
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 56 9e-07
UniRef50_O89519 Cluster: Virion protein; n=2; Tymovirus|Rep: Vir... 55 3e-06
UniRef50_P19128 Cluster: Coat protein; n=9; Tymovirus|Rep: Coat ... 54 5e-06
UniRef50_P03608 Cluster: Coat protein; n=21; Turnip yellow mosai... 52 1e-05
UniRef50_O89518 Cluster: Virion protein; n=1; Wild cucumber mosa... 51 3e-05
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 46 0.001
UniRef50_Q8V0G9 Cluster: Coat protein; n=1; Bermuda grass etched... 46 0.001
UniRef50_P15158 Cluster: Coat protein; n=9; Tymovirus|Rep: Coat ... 43 0.012
UniRef50_Q6CCA2 Cluster: Similarity; n=1; Yarrowia lipolytica|Re... 37 0.79
UniRef50_Q5JJ70 Cluster: Hypothetical membrane protein, conserve... 36 1.8
UniRef50_Q8IUC6 Cluster: Toll-like receptor adapter molecule 1; ... 35 2.4
UniRef50_A1A5Z7 Cluster: Zgc:158441; n=7; Deuterostomia|Rep: Zgc... 34 4.2
UniRef50_Q2GTG9 Cluster: Putative uncharacterized protein; n=3; ... 34 4.2
UniRef50_Q9P6R1 Cluster: Verprolin; n=2; Eukaryota|Rep: Verproli... 34 5.6
>UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-like
latent virus|Rep: Coat protein - Bombyx mori Macula-like
latent virus
Length = 237
Score = 236 bits (578), Expect = 5e-61
Identities = 113/116 (97%), Positives = 115/116 (99%)
Frame = +2
Query: 236 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 415
QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI
Sbjct: 73 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 132
Query: 416 PVTVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKSP 583
PVTVDLCWTTADVTVEG NVLATPSS+RIT+GGLALMHQATLPCDLGYINPIIKSP
Sbjct: 133 PVTVDLCWTTADVTVEGFNVLATPSSARITMGGLALMHQATLPCDLGYINPIIKSP 188
Score = 80.2 bits (189), Expect = 6e-14
Identities = 39/40 (97%), Positives = 39/40 (97%)
Frame = +1
Query: 19 MEEIVPLXVSAASAIPSLVNAFSSSKPPQTDNPSARSMDM 138
MEEIVPL VSAASAIPSLVNAFSSSKPPQTDNPSARSMDM
Sbjct: 1 MEEIVPLVVSAASAIPSLVNAFSSSKPPQTDNPSARSMDM 40
Score = 56.8 bits (131), Expect = 7e-07
Identities = 28/32 (87%), Positives = 29/32 (90%)
Frame = +1
Query: 637 NAVLXXVRAGGKASVVIRGSISVSHPLVTGHG 732
+AVL VRAG KASVVIRGSISVSHPLVTGHG
Sbjct: 206 DAVLEGVRAGVKASVVIRGSISVSHPLVTGHG 237
Score = 42.3 bits (95), Expect = 0.016
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +3
Query: 585 IPYTNHPRLNIHFHQSPE 638
IPYTNHPRLNIHFHQS +
Sbjct: 189 IPYTNHPRLNIHFHQSAD 206
>UniRef50_Q8UZB5 Cluster: Coat protein; n=1; Grapevine fleck
virus|Rep: Coat protein - Grapevine fleck virus
Length = 230
Score = 90.6 bits (215), Expect = 5e-17
Identities = 45/110 (40%), Positives = 64/110 (58%)
Frame = +2
Query: 248 IPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTV 427
+PFQ L++D+TGTE+ S+++ S P V ++ + YR A L +LEA V P+A S P TV
Sbjct: 68 LPFQFLWYDITGTESSYTSLSIASRPEVVTVARPYRHARLTSLEAFVQPTASSATYPQTV 127
Query: 428 DLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIK 577
DLCWT VT +L+ + RI G + LP +L +NP IK
Sbjct: 128 DLCWTIDSVTPARSEILSVFGAQRIAWGSVHFSAPILLPAELSSLNPTIK 177
>UniRef50_Q71EB5 Cluster: 25kDa coat protein; n=1; Grapevine Red
Globe virus|Rep: 25kDa coat protein - Grapevine Red
Globe virus
Length = 235
Score = 83.8 bits (198), Expect = 5e-15
Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Frame = +2
Query: 248 IPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTV 427
+PFQ +++DLT ET S+ + S P S+ Y A L +LE VFP PS P++
Sbjct: 71 LPFQFIFYDLTNAETGFTSLDLASKPPFLSLTSPYAYAVLQSLELTVFPKNPSYTYPMSF 130
Query: 428 DLCWTTADVTVEGVNVLATPSSSRITIGG-LALMHQATLPCDLGYINPIIKSPNSIHQPP 604
D W ++ V++ G +L+T +R+T GG + + LP DL NP++K S + P
Sbjct: 131 DAHWHSSSVSITGSQILSTYGGTRVTFGGPITSSNPIILPADLRSTNPVVKDTVSYNNTP 190
Query: 605 Q 607
+
Sbjct: 191 K 191
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 75.4 bits (177), Expect = 2e-12
Identities = 40/120 (33%), Positives = 62/120 (51%)
Frame = +2
Query: 248 IPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTV 427
+PFQ + D+ + + + ++S I YR A L L+A+V P+A S + P+T+
Sbjct: 1820 VPFQTVAMDVVAAGGNA-TFNLAGHVSLSEITAPYRKARLAELKAIVCPTAASFQSPITL 1878
Query: 428 DLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPNSIHQPPQ 607
DL W+T +V + +L +R IGG L H L DL Y+NP+IK S P+
Sbjct: 1879 DLVWSTNNVIFTDLQILQVYGGTRFAIGGPLLSHTYELRADLSYLNPVIKDSVSYVDTPK 1938
>UniRef50_P20124 Cluster: Coat protein; n=10; Tymovirus|Rep: Coat
protein - Ononis yellow mosaic virus
Length = 192
Score = 70.9 bits (166), Expect = 4e-11
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
Frame = +2
Query: 242 LIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPV 421
+++PFQ DL G S +T+ S P ++ + YR A +V EAV+FP++ S K PV
Sbjct: 32 MVVPFQVSVSDL-GVSEVSAQITLSSDPTLAQLTSIYRMASIVECEAVLFPNSTSSKNPV 90
Query: 422 TVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQ-ATLPCDLGYINPIIK 577
DL W ++ + +L T +R T+GG +Q + P L +NPIIK
Sbjct: 91 HCDLIWVPSNSSASPKTILQTYGGNRFTVGGPITSNQIISFPLRLDSVNPIIK 143
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 64.5 bits (150), Expect = 3e-09
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Frame = +2
Query: 251 PFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 430
PFQ + G+E K+ S + ++ ++ YR A L ++E V P A + P++V
Sbjct: 2034 PFQWVVASYDGSEAKNLSDDLSGSATLTKVMANYRHAELTSVELEVCPLAAAFSKPISVS 2093
Query: 431 LCWTTADVTVEGVNVLATPSSSRITIGGLALMHQAT-LPCDLGYINPIIKSP 583
WT A ++ + + T+GG LM T LP DL +NP++K P
Sbjct: 2094 AVWTIASISPASASETSYYGGRLFTVGGPVLMSSTTHLPADLTRLNPVLKGP 2145
>UniRef50_P35927 Cluster: Coat protein; n=2; Erysimum latent
virus|Rep: Coat protein - Erysimum latent virus (ELV)
Length = 202
Score = 61.3 bits (142), Expect = 3e-08
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 2/130 (1%)
Frame = +2
Query: 251 PFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 430
PFQ F L + S ++ + + P +++ + +R A L L AVV PSA S+ P+TV
Sbjct: 46 PFQ-FEFPLPAGQEGSVTLPLATFPKMATFLSRHRRAQLTQLHAVVSPSAVSIGHPLTVQ 104
Query: 431 LCWTTADVTVEGVNVLATPSSSRITIGG-LALMHQATLPCDLGYINPIIKSPNSIHQPPQ 607
L W A T +L T +I++GG + A + +L +NP IK S P+
Sbjct: 105 LIWVPASSTTTSSQILGTYGGQQISVGGQVTNSSPAKVSANLLMMNPHIKDSTSYTDTPK 164
Query: 608 -T*HPFPSIP 634
+ P++P
Sbjct: 165 LLVYSTPAVP 174
>UniRef50_Q8QY74 Cluster: Coat protein; n=1; Passion fruit yellow
mosaic virus|Rep: Coat protein - Passion fruit yellow
mosaic virus
Length = 188
Score = 60.9 bits (141), Expect = 4e-08
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Frame = +2
Query: 248 IPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTV 427
+PFQ L GT S+SV++ + VSS+ YR A L +L A + P+ S P TV
Sbjct: 37 LPFQTKLASL-GTAEVSDSVSIAANAAVSSLATPYRHARLTSLVATIHPNHLSPSNPTTV 95
Query: 428 DLCWTTADVTVEGVNVLATPSSSRITIGG-LALMHQATLPCDLGYINPIIKS 580
L W + T ++L IGG + + ++PC+L +NP+IKS
Sbjct: 96 SLVWVPFNSTATSSDILNVFGGQSFCIGGAVNSLAAISVPCNLTNVNPVIKS 147
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 59.3 bits (137), Expect = 1e-07
Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 2/162 (1%)
Frame = +2
Query: 242 LIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPV 421
L +PFQ D TG + + + ++++ YR A L+ +E V P PS P+
Sbjct: 1866 LDLPFQWKVTDFTGYAAYHGTDDLVASAVLTTLCAPYRHAELLYVEISVAPCPPSFSKPI 1925
Query: 422 TVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQAT-LPCDLGYINPIIKSPNSIHQ 598
+ WT A ++ +IT+GG ++ T +P DL +NP IKS S +
Sbjct: 1926 MFTVVWTPATLSPRDGKETDYYGGRQITVGGPVMLSSTTAVPADLARMNPFIKSSVSYND 1985
Query: 599 PPQT*HPFPSIP*TPYXXEFAPG-VKPPLSSEAPSAYLTPSS 721
P+ P++ A V+ + APS TPS+
Sbjct: 1986 TPRWTMSVPAVTGGDTKIPLATAFVRGIVRVRAPSGAATPSA 2027
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 56.4 bits (130), Expect = 9e-07
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Frame = +2
Query: 248 IPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTV 427
+PFQ G K + + ++S + GYR A L++ E P A + P++V
Sbjct: 1908 VPFQWAVASYAGDSAKFLTDDLSGSSHLSRLTIGYRHAELISAELEFAPLAAAFAKPISV 1967
Query: 428 DLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQAT-LPCDLGYINPIIKS 580
WT A + L +T+GG LM T +P DL +NP+IK+
Sbjct: 1968 TAVWTIASIAPATTTELQYYGGRLLTLGGPVLMGSVTRIPADLTRLNPVIKT 2019
>UniRef50_O89519 Cluster: Virion protein; n=2; Tymovirus|Rep: Virion
protein - Dulcamara mottle virus
Length = 188
Score = 54.8 bits (126), Expect = 3e-06
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Frame = +2
Query: 305 VTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLAT 484
V++ + +++ + GYR A LV L + P+ ++ PVTVD+ W A+ T +L+
Sbjct: 52 VSLSASESLAKLTAGYRRAKLVELFLTITPTQLAIDNPVTVDVVWVPANSTATPSKILSV 111
Query: 485 PSSSRITIGGLALMHQA-TLPCDLGYINPIIKSPNSIHQPPQ 607
R IGG Q +PC+L +N +IK P+
Sbjct: 112 YGGQRFLIGGTLTTSQVIRVPCNLQSVNAMIKDSTIYTDSPK 153
>UniRef50_P19128 Cluster: Coat protein; n=9; Tymovirus|Rep: Coat
protein - Cacao yellow mosaic virus
Length = 188
Score = 54.0 bits (124), Expect = 5e-06
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
Frame = +2
Query: 242 LIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPV 421
++ PFQ L G E ++ V++ + +++ YR A L +L+A++ P+ + P
Sbjct: 31 IVYPFQFTIASL-GVEPTADFVSIAAQAAITAYTSLYRHAILTDLQAIIHPNGYAPAFPT 89
Query: 422 TVDLCWTTADVTVEGVNVLATPSSSRITIGG-LALMHQATLPCDLGYINPIIKSPNSIHQ 598
+V L W + T +L +GG + +PC L INPIIK +
Sbjct: 90 SVALAWVPYNSTATAAKILDVFGGQEFCVGGSINSTSPIIVPCPLTNINPIIKDSVTYTD 149
Query: 599 PPQ 607
P+
Sbjct: 150 TPK 152
>UniRef50_P03608 Cluster: Coat protein; n=21; Turnip yellow mosaic
virus|Rep: Coat protein - Turnip yellow mosaic virus
Length = 189
Score = 52.4 bits (120), Expect = 1e-05
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Frame = +2
Query: 251 PFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 430
PFQ GT+ S+T+ ++ +VS++ YR A L +L + P+ + P TV
Sbjct: 34 PFQSEVL-FAGTKDAEASLTIANIDSVSTLTTFYRHASLESLWVTIHPTLQAPTFPTTVG 92
Query: 431 LCWTTADVTVEGVNVLATPSSSRITIGG-LALMHQATLPCDLGYINPIIK 577
+CW A+ V + T IGG + + + C L +NP +K
Sbjct: 93 VCWVPANSPVTPAQITKTYGGQIFCIGGAINTLSPLIVKCPLEMMNPRVK 142
>UniRef50_O89518 Cluster: Virion protein; n=1; Wild cucumber mosaic
virus|Rep: Virion protein - Wild cucumber mosaic virus
Length = 188
Score = 51.2 bits (117), Expect = 3e-05
Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Frame = +2
Query: 281 GTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTV 460
G + S+ +++ S P + + +R A L++ +A++ P + +P+TVDL W +A+
Sbjct: 44 GPKEVSSQISLSSCPELLRLTSLFRHARLLSAKAIITPFDGVVSLPITVDLAWVSANSPA 103
Query: 461 EGVNVLATPSSSRITIGG-LALMHQATLPCDLGYINPIIKSPNSIHQPPQ 607
++L S T GG + LP + +N ++K S P+
Sbjct: 104 SPTDILKIYGGSSYTFGGAINSTRPIELPLPINSVNDMLKDSVSYLDTPK 153
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 46.4 bits (105), Expect = 0.001
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Frame = +2
Query: 242 LIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPV 421
L IPFQ + + +++ + + + + + + +R + LE V+ P+ + PV
Sbjct: 1912 LTIPFQWVAL-IIKSDSAAFTADLAASTTLKKLTDPFRSCEITQLEVVLMPTLNAFNNPV 1970
Query: 422 TVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQ-ATLPCDLGYINPIIKS 580
T+ W + + L IT GG M+ AT+P DL INP IKS
Sbjct: 1971 TLHCVWRVNSIQPASGDELLYYGGQAITAGGPVSMNALATVPADLTRINPRIKS 2024
>UniRef50_Q8V0G9 Cluster: Coat protein; n=1; Bermuda grass
etched-line virus|Rep: Coat protein - Bermuda grass
etched-line virus
Length = 195
Score = 46.0 bits (104), Expect = 0.001
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Frame = +2
Query: 290 TKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGV 469
TK + + + ++ + YR A L++ E + P S P+ WT A ++
Sbjct: 52 TKHKTDDLSAFTTLAKLTVVYRHAELIHAEVELTPCPGSFSKPLMFLFVWTPASLSPATG 111
Query: 470 NVLATPSSSRITIGGLALMHQAT-LPCDLGYINPIIKSPNSIHQPPQ 607
+ +IT+GG ++ T +P DL +NP+IKS S + P+
Sbjct: 112 WETSYYGGRQITVGGPVMLSSTTVIPADLSRMNPVIKSSVSYNDCPR 158
>UniRef50_P15158 Cluster: Coat protein; n=9; Tymovirus|Rep: Coat
protein - Belladonna mottle virus (BMDV)
Length = 190
Score = 42.7 bits (96), Expect = 0.012
Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 5/127 (3%)
Frame = +2
Query: 242 LIIPFQRLYFDLT--GTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 415
+++PFQ F+ T GT + V++Q+ ++ + YR A +V +A++ P+ ++
Sbjct: 32 IVLPFQ---FEATTFGTAETAAQVSLQTADPITKLTAPYRHAQIVECKAILTPTDLAVSN 88
Query: 416 PVTVDLCWTTADVTVEGVNVL---ATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPN 586
P+TV L W A+ +L S + G ++ +P +L +N ++K
Sbjct: 89 PLTVYLAWVPANSPATPTQILKLRVYGGQSFVLGGAISAAKTIEVPLNLDSVNRMLKDSV 148
Query: 587 SIHQPPQ 607
+ P+
Sbjct: 149 TYTDTPK 155
>UniRef50_Q6CCA2 Cluster: Similarity; n=1; Yarrowia lipolytica|Rep:
Similarity - Yarrowia lipolytica (Candida lipolytica)
Length = 911
Score = 36.7 bits (81), Expect = 0.79
Identities = 23/89 (25%), Positives = 36/89 (40%)
Frame = +2
Query: 272 DLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTAD 451
DLT T T + + + A + A++ P+A +L +P DL T D
Sbjct: 515 DLTTTATDLTTTATDLTTTATDLTVPTVTALMETATALMVPTATALMVPTATDLTTTATD 574
Query: 452 VTVEGVNVLATPSSSRITIGGLALMHQAT 538
+T T + + +T ALM AT
Sbjct: 575 LTTTATATDLTTTVTDLTTTATALMETAT 603
Score = 33.9 bits (74), Expect = 5.6
Identities = 19/81 (23%), Positives = 39/81 (48%)
Frame = +2
Query: 296 SNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNV 475
+ + T ++P V+++++ + A++ P+A L +P DL T D+T +
Sbjct: 662 TTTATDLTVPTVTALMETATALMVPTATALMVPTATDLMVPTATDLTTTVTDLTTTATAL 721
Query: 476 LATPSSSRITIGGLALMHQAT 538
+ T ++ + ALM AT
Sbjct: 722 METATALTVPT-ATALMETAT 741
>UniRef50_Q5JJ70 Cluster: Hypothetical membrane protein, conserved;
n=1; Thermococcus kodakarensis KOD1|Rep: Hypothetical
membrane protein, conserved - Pyrococcus kodakaraensis
(Thermococcus kodakaraensis)
Length = 541
Score = 35.5 bits (78), Expect = 1.8
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +2
Query: 326 NVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRI 502
NVS +KG ++ Y V+ VV P SL + +D ++ + TVE +T S SR+
Sbjct: 180 NVSLSVKGVKELYSVSKSMVVAPGYSSLVFEIPIDSKYSEGEYTVELAVRCSTTSVSRL 238
>UniRef50_Q8IUC6 Cluster: Toll-like receptor adapter molecule 1;
n=11; Eutheria|Rep: Toll-like receptor adapter molecule
1 - Homo sapiens (Human)
Length = 712
Score = 35.1 bits (77), Expect = 2.4
Identities = 37/114 (32%), Positives = 46/114 (40%), Gaps = 1/114 (0%)
Frame = +2
Query: 386 VFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQATLPCDLGYIN 565
V P A S +P T T+ + VE A P S + I + PC +
Sbjct: 278 VAPDATSTGLPDTPAAPETSTNYPVECTEGSAGPQSLPLPI-----LEPVKNPCSVKDQT 332
Query: 566 PIIKSPNSIHQPPQT*HPFPSIP*TPYXXEFAPGVKPPLSSEAP-SAYLTPSSL 724
P+ S P P P P TP E +P PP S P SA+LTPSSL
Sbjct: 333 PLQLSVEDTTSPNTK--PCPPTPTTP---ETSPPPPPPPPSSTPCSAHLTPSSL 381
>UniRef50_A1A5Z7 Cluster: Zgc:158441; n=7; Deuterostomia|Rep:
Zgc:158441 - Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 917
Score = 34.3 bits (75), Expect = 4.2
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 3/121 (2%)
Frame = +2
Query: 245 IIPFQRLYFDLTGTETKSNSVT--VQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIP 418
II Q + DL+ T + + LP++ +I + V+ A+ PS PSL+
Sbjct: 708 IIKLQPVTLDLSWTPVSKKQLAWLIHHLPSLKDLIMSGCSSLCVS--ALSSPSCPSLR-- 763
Query: 419 VTVDLCWTTADVTVEGVNVLATP-SSSRITIGGLALMHQATLPCDLGYINPIIKSPNSIH 595
T+DLCW + +++ P S SR + L + + L I +++ S+
Sbjct: 764 -TLDLCWAVGVKDSQIKDLIVQPGSESRSRLRSLVSLRLSGLELSDAVIKTMVRHMPSLR 822
Query: 596 Q 598
Q
Sbjct: 823 Q 823
>UniRef50_Q2GTG9 Cluster: Putative uncharacterized protein; n=3;
Sordariomycetes|Rep: Putative uncharacterized protein -
Chaetomium globosum (Soil fungus)
Length = 887
Score = 34.3 bits (75), Expect = 4.2
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = -3
Query: 783 RSFDSSFT*NKGAETPLAMPSDEGVRYADGASDDNGGFTPGANSX*YGVQGIDGNG 616
R+F S F + A+PS GV + +G + D+G TP N +G G G
Sbjct: 459 RAFRSRFGRRNNGGSGSALPSPGGVNHGEGENGDSGSGTPSQNDMDQNSRGDPGRG 514
>UniRef50_Q9P6R1 Cluster: Verprolin; n=2; Eukaryota|Rep: Verprolin -
Schizosaccharomyces pombe (Fission yeast)
Length = 309
Score = 33.9 bits (74), Expect = 5.6
Identities = 30/101 (29%), Positives = 44/101 (43%)
Frame = +2
Query: 566 PIIKSPNSIHQPPQT*HPFPSIP*TPYXXEFAPGVKPPLSSEAPSAYLTPSSLGMAKGVS 745
P +P S +PP + P PSIP P +P PP+ S+AP PSSL +
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIP-PP-----SPASAPPIPSKAPP---IPSSLPPPAQPA 178
Query: 746 APLFQVNDESKLRTLLIVIPAXSVPPQLXLMKXCXGTNKPS 868
AP+ L + + +P PP L +++PS
Sbjct: 179 APVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRPS 219
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 850,035,734
Number of Sequences: 1657284
Number of extensions: 17717466
Number of successful extensions: 53134
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 49495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53025
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79932179145
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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