Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_M23
         (887 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1310 + 29238644-29240260                                         33   0.40 
07_01_0373 + 2783596-2784933                                           31   0.93 
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143...    29   3.7  
11_04_0307 + 16185405-16185713,16185847-16185942,16186626-161867...    29   4.9  
09_04_0506 - 18188785-18190599                                         29   6.5  
04_01_0041 - 464695-464850,467485-469029                               29   6.5  
01_05_0227 - 19512866-19514983                                         29   6.5  
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595...    28   8.6  

>06_03_1310 + 29238644-29240260
          Length = 538

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +2

Query: 575 KSPNSIHQPPQT*HPFPSIP*TPYXXEFAPGVKPPLSSEAPSAYLTPS-SLGMAKGVSAP 751
           +SP   H PP+   P P  P +P      P   PP  SE+P + + PS S   + G S P
Sbjct: 382 RSPLPHHMPPRRTPPTPPPPSSPTPSHLPP--PPPTYSESPKSSMPPSTSPPSSHGASPP 439


>07_01_0373 + 2783596-2784933
          Length = 445

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = -1

Query: 92  EEEKALTKEGMAEAAETXKGTISSMNRS 9
           E+++ LTK G +  +ET KG++ S++RS
Sbjct: 151 EQQQQLTKSGCSSTSETSKGSVLSLSRS 178


>02_01_0219 -
           1437685-1437723,1437932-1438091,1438385-1438514,
           1438627-1438696,1439264-1439407,1439771-1439837,
           1439970-1440019,1440386-1440559,1440881-1440934,
           1441008-1441112
          Length = 330

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
 Frame = +2

Query: 284 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWTTADVT 457
           TE  +N V V  L   SS   GY D  + ++   V      +  K+ V +D    TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224

Query: 458 VEGVNVLATPSSSRITIGGLALMHQ 532
           +  +N+L  P        G  L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249


>11_04_0307 +
           16185405-16185713,16185847-16185942,16186626-16186730,
           16186938-16187090,16188395-16188478,16188566-16188694,
           16188986-16189165,16189555-16189677,16189678-16189794,
           16189889-16190053
          Length = 486

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 18/58 (31%), Positives = 24/58 (41%)
 Frame = +2

Query: 572 IKSPNSIHQPPQT*HPFPSIP*TPYXXEFAPGVKPPLSSEAPSAYLTPSSLGMAKGVS 745
           + SP     PP +  P P +P  PY  + +P   PP     P   + P S   A G S
Sbjct: 13  LNSPLWSAPPPSSSSPSPPVPPDPYGADLSP---PPPPPPKPPPTVPPPSYEQAVGSS 67


>09_04_0506 - 18188785-18190599
          Length = 604

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 566 PIIKSPNSIHQPPQT*HPFPSIP*TPYXXEFAPG 667
           P+   PN +H PPQ   P  + P  P   +  PG
Sbjct: 120 PVPDRPNPVHLPPQPQPPVAAAPPPPPHNQIQPG 153


>04_01_0041 - 464695-464850,467485-469029
          Length = 566

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 245 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 421
           +I   R + D++ T  +SN + V +LP VSS  + Y D ++   +    P   P  ++ V
Sbjct: 40  LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99

Query: 422 TVD 430
            +D
Sbjct: 100 PLD 102


>01_05_0227 - 19512866-19514983
          Length = 705

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 462 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 370
           S +T + +QQ   +  ++ LG  GKTT ++L
Sbjct: 18  SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48


>02_05_0788 +
           31758119-31758384,31758482-31758634,31759385-31759509,
           31759650-31759678,31760943-31761008,31761059-31761125,
           31761226-31761370,31761404-31761451,31762014-31762182,
           31762645-31762779,31762858-31763064,31763608-31763735,
           31763815-31763866,31764046-31764060,31764502-31764609
          Length = 570

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 21/86 (24%), Positives = 36/86 (41%)
 Frame = +2

Query: 236 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 415
           Q   I  +  ++ L       N  TV  + N    + GY+    +N+   +    PSLK 
Sbjct: 198 QVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK- 256

Query: 416 PVTVDLCWTTADVTVEGVNVLATPSS 493
               D C  T ++ +EG++ L   S+
Sbjct: 257 ----DFCEPTVEM-LEGMSALKALST 277


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,990,533
Number of Sequences: 37544
Number of extensions: 539488
Number of successful extensions: 1539
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1538
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)