Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_M23
         (887 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)                    32   0.71 
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)                   31   1.6  
SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)               29   3.8  
SB_55679| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_30122| Best HMM Match : YadA (HMM E-Value=2)                        29   5.0  
SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)                 29   5.0  

>SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)
          Length = 458

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +1

Query: 415 TSHS*PLLDYC*RHS*RSQCAGHPFILSHYYWRSRPY--ASSHPPLR 549
           T +   LL YC     R   AGHPF+L  Y +  R Y   +S  PLR
Sbjct: 91  TKYDIDLLGYCTEQEIRRVVAGHPFLLDGYKFDLRVYVLVTSCDPLR 137


>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
          Length = 2748

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 595  PTTPDLTSISINPLNAVLXXVRAGGKASVVIRGSI--SVSHPLVTG 726
            PT+P++TS S  P       ++AG +  VV+  ++  SV  P++ G
Sbjct: 1911 PTSPEMTSRSGQPFKRFTKHIKAGDRLRVVMGSTVLKSVLQPVIQG 1956


>SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)
          Length = 474

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -2

Query: 457 CDVSSSPTKVNCDWYFEARGGRKNDSLKIDKIRVAVAFYDGGDVR**LHSDTVRFGFGAS 278
           C  +  P   +  W+F +  G K DS  +  +  +     G  V   +HS  VR G GA+
Sbjct: 275 CVRAHLPNAADQPWFFLSNTGAKIDSNNVQSLLRSFQRSTGVQVSKPIHSTAVRCGSGAT 334

Query: 277 KIE 269
           + E
Sbjct: 335 EEE 337


>SB_55679| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 10/127 (7%)
 Frame = +2

Query: 470 NVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPNSIHQPPQT*HPF---PSIP*T 640
           ++  TP ++        L+H   L   L YI  I + P +   P Q  HP      +  T
Sbjct: 9   SISVTPLTTSSPSQNHPLLHPVHLSTTLYYIQSISEPPLTTSSPSQY-HPLLHPVHLSTT 67

Query: 641 PYXXEFAPGVKPPLSSEAPSAY---LTPSSLG----MAKGVSAPLFQVNDESKLRTLLIV 799
           PY  +      PPL++ +PS Y   L P  L       + +S P    +  S+   LL  
Sbjct: 68  PYYIQSIS--VPPLTTSSPSQYHPLLHPVHLSTIPYYIQSISVPPLTTSSPSQYHPLLHP 125

Query: 800 IPAXSVP 820
           +   ++P
Sbjct: 126 VHLSTIP 132


>SB_30122| Best HMM Match : YadA (HMM E-Value=2)
          Length = 408

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 395 SAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRIT 505
           S P  K+P+T     T+A+VT    +++ +PS + +T
Sbjct: 239 SRPETKVPITTIGASTSAEVTTSQRDLMPSPSQAHVT 275


>SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1433

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
 Frame = +2

Query: 269 FDLTGTETKSNSVTVQS---LPNVSSIIKGYRDAYLVNL 376
           F +TG E KS+S+T++    +P V ++ +G  D +LV+L
Sbjct: 485 FTITGQEGKSDSITIRHADVIPRV-ALARGNEDVFLVHL 522


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,187,682
Number of Sequences: 59808
Number of extensions: 550703
Number of successful extensions: 1634
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1625
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)