Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_M23
         (887 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ...    32   0.44 
At5g63610.1 68418.m07986 protein kinase, putative similar to cyc...    29   4.1  
At5g14220.1 68418.m01661 protoporphyrinogen oxidase, putative si...    29   4.1  
At3g18360.1 68416.m02335 VQ motif-containing protein contains PF...    29   4.1  
At5g46310.1 68418.m05701 WRKY family transcription factor identi...    28   7.2  
At4g00890.1 68417.m00120 proline-rich family protein contains pr...    28   7.2  
At3g24550.1 68416.m03083 protein kinase family protein contains ...    28   7.2  
At1g50090.1 68414.m05619 aminotransferase class IV family protei...    28   7.2  
At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin...    28   9.5  
At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH...    28   9.5  
At3g63070.1 68416.m07084 PWWP domain-containing protein putative...    28   9.5  
At3g60280.1 68416.m06738 uclacyanin 3 (UCC3) identical to uclacy...    28   9.5  
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    28   9.5  

>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
           RNA recognition motif (RRM)-containing protein similar
           to SP|O59800 Cell cycle control protein cwf5
           {Schizosaccharomyces pombe}, RNA Binding Protein 47
           [Nicotiana plumbaginifolia] GI:9663769; contains Pfam
           profile: PF00076 RNA recognition motif (aka RRM, RBD, or
           RNP domain)
          Length = 481

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
 Frame = +2

Query: 527 HQATLPCDLGYI-NPIIKS--PNSIHQPPQT*HPFPSIP*TPYXXEFAPGVKPPLSSEAP 697
           HQ+  P   GY+ +P  +   PN  HQP    H  P     PY  +  PG +P  S  A 
Sbjct: 389 HQSYPPPPYGYMPSPYQQQYPPNHHHQPSPMQHYAPPPAAYPYPQQPGPGSRPAPSPTAV 448

Query: 698 SAYLTPSSLGMAKG 739
           SA ++P S     G
Sbjct: 449 SA-ISPDSAPAGSG 461


>At5g63610.1 68418.m07986 protein kinase, putative similar to
           cyclin-dependent kinase cdc2MsE [Medicago sativa]
           gi|1806144|emb|CAA65981; contains protein kinase domain,
           Pfam:PF00069
          Length = 470

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = +1

Query: 493 LSHYYWRSRPYASSHPPLRSRLHQPDHQIPEFHTPTTPDLT-SISINPLNAVLXXVRAGG 669
           L H Y+R  P    +  + S+  + +   P     T  D   + SINP  AV     AG 
Sbjct: 328 LEHEYFRMDPLPGRNAFVASQPMEKNVNYPTRPVDTNTDFEGTTSINPPQAVAAGNVAGN 387

Query: 670 KASVVIRGSISVSHPLV 720
            A     GS S+  P+V
Sbjct: 388 MAGAHGMGSRSMPRPMV 404


>At5g14220.1 68418.m01661 protoporphyrinogen oxidase, putative
           similar to protoporphyrinogen IX oxidase, mitochondrial
           (PPO II) from Nicotiana tabacum [SP|O24164], Glycine
           max, AB025102, Spinacia oleracea [GI:14349153]; contains
           Pfam amine oxidase, flavin-containing domain [PF015930]
          Length = 508

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 478 GHPFILSHYYWRSR-P-YASSHPPLRSRLHQPDHQIPEF 588
           G P  ++HYYWR   P Y SS+  +   + + ++ +P F
Sbjct: 427 GEPVSVNHYYWRKAFPLYDSSYDSVMEAIDKMENDLPGF 465


>At3g18360.1 68416.m02335 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 285

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +3

Query: 531 KPPSPAISATSTRSSNPRIPYTNHPRLNIH 620
           KPPSP+  +++ +  +P I YT+ PR+ IH
Sbjct: 57  KPPSPSSFSSAAKPRHPVIIYTHTPRI-IH 85


>At5g46310.1 68418.m05701 WRKY family transcription factor identical
           to WRKY transcription factor 8 GI:15384212 from
           [Arabidopsis thaliana]
          Length = 372

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 508 WRSRPYASSHPPLRSRLHQPDHQIPEFHTPTTPDLTSISINPLN 639
           W S PY   H P++ ++ Q   Q+      T P +T +  N LN
Sbjct: 279 WLSLPYPYHHYPIKYQIMQSSIQMQHSGIGTEPLVTFVGQNRLN 322


>At4g00890.1 68417.m00120 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 431

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +1

Query: 517 RPYASSHPPLRS---RLHQPDHQIPEFHTPTTPDLTSISINPLN 639
           R   SS PP R+    L Q   Q P FH  + P+  S+ ++PL+
Sbjct: 23  RQSVSSQPPRRTVQETLSQSPPQSPLFHPQSPPEPKSLPLSPLS 66


>At3g24550.1 68416.m03083 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 652

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 566 PIIKSPNSIHQPPQT*HPFPSIP*TPYXXEFAPG-VKPPLSSEAPSAYLTPS 718
           P   S NS   PP +  P PS+P         PG + PPL   +PSA +TPS
Sbjct: 44  PPSPSTNSTSPPPSSPLP-PSLP-----PPSPPGSLTPPLPQPSPSAPITPS 89


>At1g50090.1 68414.m05619 aminotransferase class IV family protein
           contains Pfam profile: PF01063 aminotransferase class IV
          Length = 367

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 21/83 (25%), Positives = 37/83 (44%)
 Frame = +2

Query: 311 VQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPS 490
           V+S  N S ++K   +A       V+F  A + K    V  C    ++ +   N+++TP 
Sbjct: 201 VKSCTNYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEEVSTC----NIFILKGNIVSTPP 256

Query: 491 SSRITIGGLALMHQATLPCDLGY 559
           +S   + G+       L  D+GY
Sbjct: 257 TSGTILPGITRKSICELARDIGY 279


>At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin
           motor protein - Ustilago maydis, PID:g2062750; identical
           to cDNA   MKRP2 mRNA for kinesin-related protein
           GI:16902293, kinesin-related protein [Arabidopsis
           thaliana] GI:16902294
          Length = 1055

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 531 KPPSPAISATSTRSSNPRIPYTN 599
           +PPSPA S +S+  SN  IP +N
Sbjct: 12  RPPSPASSTSSSHLSNRLIPRSN 34


>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1
           (MSH6-1) (AGAA.3) identical to SP|O04716 DNA mismatch
           repair protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis
           thaliana}
          Length = 1324

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +2

Query: 314 QSLPNVSSIIKGYRDAY 364
           QSLPN+SS IK ++DA+
Sbjct: 854 QSLPNISSSIKYFKDAF 870


>At3g63070.1 68416.m07084 PWWP domain-containing protein putative
            transcription factor HUA2, Arabidopsis thaliana,
            EMBL:AF116556
          Length = 1347

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 508  WRSRPYASSHPPLRSRLHQPDHQIPEFH 591
            ++ RPY SSHPP     H   +  P+ H
Sbjct: 1201 FQHRPYPSSHPPPPPPSHHYSYMEPDHH 1228


>At3g60280.1 68416.m06738 uclacyanin 3 (UCC3) identical to
           uclacyanin 3 GI:3395770 from [Arabidopsis thaliana];
           contains Pfam profile PF02298: Plastocyanin-like domain;
           identical to cDNA uclacyanin 3 (UCC3)GI:3395769
          Length = 222

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/49 (38%), Positives = 22/49 (44%)
 Frame = +2

Query: 578 SPNSIHQPPQT*HPFPSIP*TPYXXEFAPGVKPPLSSEAPSAYLTPSSL 724
           SP++   PP T    PS P +P      P   PP     PS  L PSSL
Sbjct: 124 SPSTPSSPPST----PSTPSSPPSTPSTPS-SPPSPPSPPSPSLPPSSL 167


>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +2

Query: 581 PNSIHQPPQT*HPFPSIP*TPYXXEFAPGVKPPLSSEAPSAYLTP 715
           P  +H PP   H  P    +P    ++P   PP+ S  P  +  P
Sbjct: 589 PPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPPPVHSPPPPVFSPP 633


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,502,551
Number of Sequences: 28952
Number of extensions: 402937
Number of successful extensions: 1193
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)