Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_M22
         (872 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305...    29   3.7  
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182...    29   3.7  
07_03_1747 + 29188568-29188715,29188793-29189541                       29   6.4  
07_03_1400 + 26287124-26287298,26287925-26288007,26288141-262882...    29   6.4  
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321...    28   8.5  
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707...    28   8.5  
02_05_0822 + 32025992-32026696,32027237-32027314,32027547-320277...    28   8.5  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   8.5  

>08_02_1291 +
           25930056-25930067,25930289-25930334,25930434-25930546,
           25930645-25930930,25931357-25931421,25931642-25931693,
           25931774-25931883,25932611-25932641,25932853-25933004,
           25934622-25934840
          Length = 361

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 229 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 140
           +GG  L    ++Q  G   Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129


>04_01_0159 -
           1824343-1824405,1824485-1824595,1825282-1825448,
           1825853-1826029,1826404-1826656
          Length = 256

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -1

Query: 401 TGAESVVPGGGCSRV*QYHVRPPQAFRGHQPSAAAPXPLRSNSVVCRSNS 252
           T + S    GGCS    +   PP AFRG+  +   P     + V CR+ S
Sbjct: 59  TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107


>07_03_1747 + 29188568-29188715,29188793-29189541
          Length = 298

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +1

Query: 370 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSXVLG 522
           PPP TT++  V L TA +   S   +  QF+C+     TTC  + S  + G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260


>07_03_1400 +
           26287124-26287298,26287925-26288007,26288141-26288270,
           26288369-26288442,26288797-26288883,26288976-26289100,
           26289232-26289292,26289606-26289683,26289785-26289890,
           26289978-26290123,26290264-26290380
          Length = 393

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +3

Query: 456 ISMQLDNWPNDMQTCTFKXGSRMHNSDEMD 545
           ++++   W ND+++C F+  SR  +S+ M+
Sbjct: 83  VNLEGGGWCNDVKSCVFRKSSRRGSSNHME 112


>11_06_0411 -
           23230580-23230795,23231407-23231862,23232142-23232195,
           23232251-23232367
          Length = 280

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 214 VRVHRADTGRSSNELDRQTTELERRG 291
           V+ H  +  R S EL+RQ  ELER+G
Sbjct: 89  VQRHGEELERQSRELERQREELERQG 114


>07_03_0809 -
           21669632-21669637,21669871-21670131,21670573-21670752,
           21671458-21672819
          Length = 602

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 101 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 256
           +L   +D L+  YD+  PPDS+ V        HA      + +R+L  + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209


>02_05_0822 +
           32025992-32026696,32027237-32027314,32027547-32027713,
           32027811-32027885,32028624-32028742,32028908-32029204,
           32029275-32029362,32029467-32029572,32029727-32029837,
           32030520-32030683,32031237-32031357,32031958-32032182,
           32032267-32032457,32032658-32032825,32032911-32033016,
           32033301-32033438,32033533-32033697,32033777-32033980,
           32034341-32034535,32034603-32034674,32034797-32034949
          Length = 1215

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 338 PPQAFR-GHQPSAAAPXPLRSNSVVCRSNS 252
           PP+ FR GH P AAAP PLR++     S S
Sbjct: 32  PPEKFRSGHLPRAAAP-PLRTDDGSVASGS 60


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 399 GRGERSPRRWLQPRLAVPRQASTSVPRTP 313
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,953,441
Number of Sequences: 37544
Number of extensions: 464081
Number of successful extensions: 1366
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)