Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_M18
         (916 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37177| Best HMM Match : Neur_chan_LBD (HMM E-Value=5.3)             31   1.7  
SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.7  
SB_38490| Best HMM Match : Neur_chan_LBD (HMM E-Value=2e-24)           31   1.7  
SB_453| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.1e-08)           28   9.2  

>SB_37177| Best HMM Match : Neur_chan_LBD (HMM E-Value=5.3)
          Length = 79

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +2

Query: 224 TVRIQADLQMNXIDKRLSXNXGEWGCSTWLVSSER--LWMPDXVLLN 358
           T+R+Q   ++   D +L  +  ++G    +V  ER  +W+PD VLLN
Sbjct: 32  TIRLQQIYELAWWDHKLQWDQSKYGGIKEVVLPERGVIWVPDVVLLN 78


>SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 724

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +2

Query: 224 TVRIQADLQMNXIDKRLSXNXGEWGCSTWLVSSER--LWMPDXVLLN 358
           T+R+Q   ++   D +L  +  ++G    +V  ER  +W+PD VLLN
Sbjct: 32  TIRLQQIYELAWWDHKLQWDQSKYGGIKEVVLPERGVIWVPDVVLLN 78


>SB_38490| Best HMM Match : Neur_chan_LBD (HMM E-Value=2e-24)
          Length = 478

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 260 IDKRLSXNXGEWG-CSTWLVSSERLWMPDXVLLN 358
           ++  LS N  E+G  +T  V  +RLW+PD VL N
Sbjct: 80  VNPSLSWNASEFGGVNTLHVEPDRLWVPDIVLYN 113


>SB_453| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.1e-08)
          Length = 362

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
 Frame = +2

Query: 227 VRIQADLQMNXI------DKRLSXNXGEWG-CSTWLVSSERLWMPDXVLLN 358
           ++I+ D+ +N I      D RL  N  ++G   +++  S +LW+PD  L N
Sbjct: 264 IKIKFDIALNQIIDLYWTDFRLRWNHTKYGGIKSFVTPSRQLWLPDITLYN 314


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,582,602
Number of Sequences: 59808
Number of extensions: 246176
Number of successful extensions: 781
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2645618622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)