Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_M18
(916 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014297-3553|AAF56301.2| 567|Drosophila melanogaster CG5610-PA... 33 0.55
X07194-1|CAA30172.1| 567|Drosophila melanogaster mature acetylc... 31 1.7
AY119445-1|AAM50099.1| 1012|Drosophila melanogaster AT05114p pro... 29 6.7
X53583-1|CAA37652.1| 576|Drosophila melanogaster alpha-2-subuni... 29 8.9
X52274-1|CAA36517.1| 576|Drosophila melanogaster nicotinic acet... 29 8.9
AY058446-1|AAL13675.1| 576|Drosophila melanogaster GH22843p pro... 29 8.9
AE014297-3556|AAF56303.1| 576|Drosophila melanogaster CG6844-PB... 29 8.9
AE014297-3555|AAF56302.2| 576|Drosophila melanogaster CG6844-PA... 29 8.9
>AE014297-3553|AAF56301.2| 567|Drosophila melanogaster CG5610-PA
protein.
Length = 567
Score = 33.1 bits (72), Expect = 0.55
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = +2
Query: 134 RTIGTPPPXSKIVVNLTL-HLRHANIRESESTVRIQADLQMNXIDKRLSXNXGEWG-CST 307
R +G + + L L L N++ T + + + N D +L N ++G T
Sbjct: 41 RPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVWVEQEWN--DYKLKWNPDDYGGVDT 98
Query: 308 WLVSSERLWMPDXVLLN 358
V SE +W+PD VL N
Sbjct: 99 LHVPSEHIWLPDIVLYN 115
>X07194-1|CAA30172.1| 567|Drosophila melanogaster mature
acetylcholine receptoralpha-like subunit protein.
Length = 567
Score = 31.5 bits (68), Expect = 1.7
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Frame = +2
Query: 134 RTIGTPPPXSKIVVNLTL-HLRHANIRESESTVRIQADLQMNXIDKRLSXNXGEWG-CST 307
R +G + + L L L N++ T + + + N D +L N ++G T
Sbjct: 41 RPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVWVEQEWN--DYKLKWNPDDYGGVDT 98
Query: 308 WLVSSERLWMPDXVLLN 358
V SE +W PD VL N
Sbjct: 99 LHVPSEHIWHPDIVLYN 115
>AY119445-1|AAM50099.1| 1012|Drosophila melanogaster AT05114p
protein.
Length = 1012
Score = 29.5 bits (63), Expect = 6.7
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = -1
Query: 319 GHQPSAAAPLPXVXTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVRGGSPD 140
GHQ APL QSF+D + K +GG TN + +Q Q D ++ + D
Sbjct: 784 GHQIGKPAPLFAKLEQSFIDELKGK-----YGGAQATNDAAQAVQAQADKVRELKASTKD 838
Query: 139 RTL 131
+ +
Sbjct: 839 KAI 841
>X53583-1|CAA37652.1| 576|Drosophila melanogaster alpha-2-subunit
nicotinic acetylcholinereceptor precursor protein.
Length = 576
Score = 29.1 bits (62), Expect = 8.9
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = +2
Query: 167 IVVNLTLHLRHA---NIRESESTVRIQADLQMNXIDKRLSXNXGEWGCSTWL-VSSERLW 334
++V L L L N+++ T + L+ D + + E+G T L V SE +W
Sbjct: 70 VLVKLGLRLSQLIDLNLKDQILTTNVW--LEHEWQDHKFKWDPSEYGGVTELYVPSEHIW 127
Query: 335 MPDXVLLN 358
+PD VL N
Sbjct: 128 LPDIVLYN 135
>X52274-1|CAA36517.1| 576|Drosophila melanogaster nicotinic
acetylcholine receptoralpha subunit protein.
Length = 576
Score = 29.1 bits (62), Expect = 8.9
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = +2
Query: 167 IVVNLTLHLRHA---NIRESESTVRIQADLQMNXIDKRLSXNXGEWGCSTWL-VSSERLW 334
++V L L L N+++ T + L+ D + + E+G T L V SE +W
Sbjct: 70 VLVKLGLRLSQLIDLNLKDQILTTNVW--LEHEWQDHKFKWDPSEYGGVTELYVPSEHIW 127
Query: 335 MPDXVLLN 358
+PD VL N
Sbjct: 128 LPDIVLYN 135
>AY058446-1|AAL13675.1| 576|Drosophila melanogaster GH22843p
protein.
Length = 576
Score = 29.1 bits (62), Expect = 8.9
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = +2
Query: 167 IVVNLTLHLRHA---NIRESESTVRIQADLQMNXIDKRLSXNXGEWGCSTWL-VSSERLW 334
++V L L L N+++ T + L+ D + + E+G T L V SE +W
Sbjct: 70 VLVKLGLRLSQLIDLNLKDQILTTNVW--LEHEWQDHKFKWDPSEYGGVTELYVPSEHIW 127
Query: 335 MPDXVLLN 358
+PD VL N
Sbjct: 128 LPDIVLYN 135
>AE014297-3556|AAF56303.1| 576|Drosophila melanogaster CG6844-PB,
isoform B protein.
Length = 576
Score = 29.1 bits (62), Expect = 8.9
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = +2
Query: 167 IVVNLTLHLRHA---NIRESESTVRIQADLQMNXIDKRLSXNXGEWGCSTWL-VSSERLW 334
++V L L L N+++ T + L+ D + + E+G T L V SE +W
Sbjct: 70 VLVKLGLRLSQLIDLNLKDQILTTNVW--LEHEWQDHKFKWDPSEYGGVTELYVPSEHIW 127
Query: 335 MPDXVLLN 358
+PD VL N
Sbjct: 128 LPDIVLYN 135
>AE014297-3555|AAF56302.2| 576|Drosophila melanogaster CG6844-PA,
isoform A protein.
Length = 576
Score = 29.1 bits (62), Expect = 8.9
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = +2
Query: 167 IVVNLTLHLRHA---NIRESESTVRIQADLQMNXIDKRLSXNXGEWGCSTWL-VSSERLW 334
++V L L L N+++ T + L+ D + + E+G T L V SE +W
Sbjct: 70 VLVKLGLRLSQLIDLNLKDQILTTNVW--LEHEWQDHKFKWDPSEYGGVTELYVPSEHIW 127
Query: 335 MPDXVLLN 358
+PD VL N
Sbjct: 128 LPDIVLYN 135
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,687,009
Number of Sequences: 53049
Number of extensions: 412264
Number of successful extensions: 1252
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4484945457
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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