Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_M18
(916 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical pr... 38 0.013
X86403-1|CAA60157.1| 575|Caenorhabditis elegans nicotinic acety... 37 0.023
U23525-1|AAK71377.1| 575|Caenorhabditis elegans Acetylcholine r... 37 0.023
AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine... 36 0.031
X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic... 35 0.071
X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic... 35 0.071
U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated p... 35 0.071
U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical pr... 32 0.66
Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical pr... 31 0.87
Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical pr... 31 0.87
AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical ... 31 0.87
AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical ... 31 0.87
AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical ... 31 0.87
AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical ... 31 0.87
Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical pr... 31 1.1
X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha nicot... 31 1.1
X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic acety... 31 1.1
AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic ace... 30 2.0
AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinate... 30 2.0
Z80220-5|CAB02308.1| 493|Caenorhabditis elegans Hypothetical pr... 29 6.1
X83888-1|CAA58765.1| 493|Caenorhabditis elegans beta-1 subunit ... 29 6.1
U81144-1|AAB39358.1| 493|Caenorhabditis elegans non-alpha nicot... 29 6.1
>Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical
protein C35C5.5 protein.
Length = 531
Score = 37.5 bits (83), Expect = 0.013
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +2
Query: 245 LQMNXIDKRLSXNXGEWGCSTWL-VSSERLWMPDXVLLN 358
L+M DK+L+ N +WG ++ + S+++W+PD VL N
Sbjct: 81 LEMQWYDKKLTWNPTDWGGVEYIHIPSDQIWIPDIVLYN 119
>X86403-1|CAA60157.1| 575|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 575
Score = 36.7 bits (81), Expect = 0.023
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +2
Query: 134 RTIGTPPPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNXIDKRLSXNXGEWG-CSTW 310
+ + +PP V + L + N+ E ++ L M D +L+ N E+G S
Sbjct: 79 KNVSSPPVVVDFGVAMILLI---NVDEKNQILQTNVWLTMKWNDFQLAWNPAEYGNISNL 135
Query: 311 LVSSERLWMPDXVLLN 358
V S+R+W+PD VL N
Sbjct: 136 HVPSDRVWLPDIVLFN 151
>U23525-1|AAK71377.1| 575|Caenorhabditis elegans Acetylcholine
receptor protein 2 protein.
Length = 575
Score = 36.7 bits (81), Expect = 0.023
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +2
Query: 134 RTIGTPPPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNXIDKRLSXNXGEWG-CSTW 310
+ + +PP V + L + N+ E ++ L M D +L+ N E+G S
Sbjct: 79 KNVSSPPVVVDFGVAMILLI---NVDEKNQILQTNVWLTMKWNDFQLAWNPAEYGNISNL 135
Query: 311 LVSSERLWMPDXVLLN 358
V S+R+W+PD VL N
Sbjct: 136 HVPSDRVWLPDIVLFN 151
>AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine
receptor protein 6 protein.
Length = 562
Score = 36.3 bits (80), Expect = 0.031
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 203 NIRESESTVRIQADLQMNXIDKRLSXNXGEWGCSTWL-VSSERLWMPDXVLLN 358
++ E + + ++ L + +D RLS N E+G T + E LW+PD +L N
Sbjct: 44 DVHEKDQVITLKGTLIHHWLDYRLSWNPDEFGNITLMHFPGEMLWLPDIILYN 96
>X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 35.1 bits (77), Expect = 0.071
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Frame = +2
Query: 155 PXSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNXIDKRLSXNXGEWG-CSTWLVSSER 328
P + + L L L ++ E + + L+ ID++LS + +G + V E
Sbjct: 48 PNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLSWDPVNYGGVNVLYVPYEM 107
Query: 329 LWMPDXVLLNXXXXTXGGLRSPXPRYLXTGSXSWD 433
+W+PD VL N S TG +W+
Sbjct: 108 IWVPDIVLYNNADSNYNITISTKATLHYTGEVTWE 142
>X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 35.1 bits (77), Expect = 0.071
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Frame = +2
Query: 155 PXSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNXIDKRLSXNXGEWG-CSTWLVSSER 328
P + + L L L ++ E + + L+ ID++LS + +G + V E
Sbjct: 48 PNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLSWDPVNYGGVNVLYVPYEM 107
Query: 329 LWMPDXVLLNXXXXTXGGLRSPXPRYLXTGSXSWD 433
+W+PD VL N S TG +W+
Sbjct: 108 IWVPDIVLYNNADSNYNITISTKATLHYTGEVTWE 142
>U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated
protein 38 protein.
Length = 511
Score = 35.1 bits (77), Expect = 0.071
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Frame = +2
Query: 155 PXSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNXIDKRLSXNXGEWG-CSTWLVSSER 328
P + + L L L ++ E + + L+ ID++LS + +G + V E
Sbjct: 48 PNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLSWDPVNYGGVNVLYVPYEM 107
Query: 329 LWMPDXVLLNXXXXTXGGLRSPXPRYLXTGSXSWD 433
+W+PD VL N S TG +W+
Sbjct: 108 IWVPDIVLYNNADSNYNITISTKATLHYTGEVTWE 142
>U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical
protein F18G5.4 protein.
Length = 615
Score = 31.9 bits (69), Expect = 0.66
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 212 ESESTVRIQADLQMNXIDKRLSXNXGEWG-CSTWLVSSERLWMPDXVLLN 358
E + ++ L +N +D RLS N W + R+W PD +L+N
Sbjct: 154 ERNQALTTRSWLNINWMDPRLSWNESLWSEIKAIYIPHARIWKPDIILVN 203
>Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 31.5 bits (68), Expect = 0.87
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +2
Query: 152 PPXSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNXIDKRLSXNXGEWG--CSTWLVSS 322
PP + V L L H I E + T+ + + + +D L+ + +G TW +
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFGGITKTW-IPL 141
Query: 323 ERLWMPDXVLLN 358
+++W+PD ++ N
Sbjct: 142 DKIWVPDIIVFN 153
>Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 31.5 bits (68), Expect = 0.87
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +2
Query: 152 PPXSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNXIDKRLSXNXGEWG--CSTWLVSS 322
PP + V L L H I E + T+ + + + +D L+ + +G TW +
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFGGITKTW-IPL 141
Query: 323 ERLWMPDXVLLN 358
+++W+PD ++ N
Sbjct: 142 DKIWVPDIIVFN 153
>AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 31.5 bits (68), Expect = 0.87
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +2
Query: 152 PPXSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNXIDKRLSXNXGEWG--CSTWLVSS 322
PP + V L L H I E + T+ + + + +D L+ + +G TW +
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFGGITKTW-IPL 141
Query: 323 ERLWMPDXVLLN 358
+++W+PD ++ N
Sbjct: 142 DKIWVPDIIVFN 153
>AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 31.5 bits (68), Expect = 0.87
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +2
Query: 152 PPXSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNXIDKRLSXNXGEWG--CSTWLVSS 322
PP + V L L H I E + T+ + + + +D L+ + +G TW +
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFGGITKTW-IPL 141
Query: 323 ERLWMPDXVLLN 358
+++W+PD ++ N
Sbjct: 142 DKIWVPDIIVFN 153
>AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 31.5 bits (68), Expect = 0.87
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +2
Query: 152 PPXSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNXIDKRLSXNXGEWG--CSTWLVSS 322
PP + V L L H I E + T+ + + + +D L+ + +G TW +
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFGGITKTW-IPL 141
Query: 323 ERLWMPDXVLLN 358
+++W+PD ++ N
Sbjct: 142 DKIWVPDIIVFN 153
>AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 31.5 bits (68), Expect = 0.87
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +2
Query: 152 PPXSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNXIDKRLSXNXGEWG--CSTWLVSS 322
PP + V L L H I E + T+ + + + +D L+ + +G TW +
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFGGITKTW-IPL 141
Query: 323 ERLWMPDXVLLN 358
+++W+PD ++ N
Sbjct: 142 DKIWVPDIIVFN 153
>Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical
protein F09E8.7 protein.
Length = 507
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 152 PPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNXIDKRLSXNXGEWGCSTWL-VSSER 328
P KI + L L + N+ E E + L M D +L + ++ T + V+ E+
Sbjct: 63 PMIVKIGMQLVLLI---NVDEKEQVMHTNVWLTMKWDDFQLKWDPRDYANITQIRVAPEK 119
Query: 329 LWMPDXVLLN 358
+W+PD VL N
Sbjct: 120 VWLPDIVLFN 129
>X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit protein.
Length = 507
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 152 PPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNXIDKRLSXNXGEWGCSTWL-VSSER 328
P KI + L L + N+ E E + L M D +L + ++ T + V+ E+
Sbjct: 63 PMIVKIGMQLVLLI---NVDEKEQVMHTNVWLTMKWDDFQLKWDPRDYANITQIRVAPEK 119
Query: 329 LWMPDXVLLN 358
+W+PD VL N
Sbjct: 120 VWLPDIVLFN 129
>X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 507
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 152 PPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNXIDKRLSXNXGEWGCSTWL-VSSER 328
P KI + L L + N+ E E + L M D +L + ++ T + V+ E+
Sbjct: 63 PMIVKIGMQLVLLI---NVDEKEQVMHTNVWLTMKWDDFQLKWDPRDYANITQIRVAPEK 119
Query: 329 LWMPDXVLLN 358
+W+PD VL N
Sbjct: 120 VWLPDIVLFN 129
>AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic
acetylcholine receptoralpha subunit protein.
Length = 502
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +2
Query: 167 IVVNLTLHLRHA-NIRESESTVRIQADLQMNXIDKRLSXNXGEWG-CSTWLVSSERLWMP 340
+VV L L ++ E + LQ + +D +L + E+G V S+ +W+P
Sbjct: 52 LVVTFKLKLSQLLDVHEKNQIMTTNVWLQHSWMDYKLRWDPVEYGGVEVLYVPSDTIWLP 111
Query: 341 DXVLLN 358
D VL N
Sbjct: 112 DVVLYN 117
>AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinated
protein 63 protein.
Length = 502
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +2
Query: 167 IVVNLTLHLRHA-NIRESESTVRIQADLQMNXIDKRLSXNXGEWG-CSTWLVSSERLWMP 340
+VV L L ++ E + LQ + +D +L + E+G V S+ +W+P
Sbjct: 52 LVVTFKLKLSQLLDVHEKNQIMTTNVWLQHSWMDYKLRWDPVEYGGVEVLYVPSDTIWLP 111
Query: 341 DXVLLN 358
D VL N
Sbjct: 112 DVVLYN 117
>Z80220-5|CAB02308.1| 493|Caenorhabditis elegans Hypothetical
protein T08G11.5 protein.
Length = 493
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +2
Query: 167 IVVNLTLHL-RHANIRESESTVRIQADLQMNXIDKRLSXNXGEWGCSTWL-VSSERLWMP 340
++V + L L N+ E + + L + D ++ N +G + VS +++W+P
Sbjct: 56 LIVKMALQLVLLINVDEKDQVMHTNVWLTLQWHDFQMKWNPVNYGEIKQIRVSPDKVWLP 115
Query: 341 DXVLLN 358
D VL N
Sbjct: 116 DIVLFN 121
>X83888-1|CAA58765.1| 493|Caenorhabditis elegans beta-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 493
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +2
Query: 167 IVVNLTLHL-RHANIRESESTVRIQADLQMNXIDKRLSXNXGEWGCSTWL-VSSERLWMP 340
++V + L L N+ E + + L + D ++ N +G + VS +++W+P
Sbjct: 56 LIVKMALQLVLLINVDEKDQVMHTNVWLTLQWHDFQMKWNPVNYGEIKQIRVSPDKVWLP 115
Query: 341 DXVLLN 358
D VL N
Sbjct: 116 DIVLFN 121
>U81144-1|AAB39358.1| 493|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit precursor
protein.
Length = 493
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +2
Query: 167 IVVNLTLHL-RHANIRESESTVRIQADLQMNXIDKRLSXNXGEWGCSTWL-VSSERLWMP 340
++V + L L N+ E + + L + D ++ N +G + VS +++W+P
Sbjct: 56 LIVKMALQLVLLINVDEKDQVMHTNVWLTLQWHDFQMKWNPVNYGEIKQIRVSPDKVWLP 115
Query: 341 DXVLLN 358
D VL N
Sbjct: 116 DIVLFN 121
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,172,109
Number of Sequences: 27780
Number of extensions: 186060
Number of successful extensions: 534
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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