Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_M18
(916 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 33 0.004
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 33 0.004
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 31 0.015
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 27 0.31
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 26 0.42
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 26 0.42
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 26 0.55
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 25 0.73
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 25 0.73
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 25 0.96
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 23 2.9
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 33.1 bits (72), Expect = 0.004
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = +2
Query: 134 RTIGTPPPXSKIVVNLTL-HLRHANIRESESTVRIQADLQMNXIDKRLSXNXGEWG-CST 307
R +G + + L L L N++ T + + + N D +L N ++G T
Sbjct: 37 RPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVWVEQEWN--DYKLKWNPDDYGGVDT 94
Query: 308 WLVSSERLWMPDXVLLN 358
V SE +W+PD VL N
Sbjct: 95 LHVPSEHIWLPDIVLYN 111
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 33.1 bits (72), Expect = 0.004
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Frame = +2
Query: 203 NIRESESTVRIQADLQMNXIDKRLSXNXGEWGCSTWL-VSSERLWMPDXVLLNXXXXTXG 379
N++ T + + + N D +L N E+G L V SE +W+PD VL N
Sbjct: 74 NLKNQVMTTNVWVEQRWN--DYKLKWNPEEYGGVEMLYVPSENIWLPDIVLYNNADGNYE 131
Query: 380 GLRSPXPRYLXTGSXSW 430
TG SW
Sbjct: 132 VTLMTKATLKYTGDVSW 148
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 31.1 bits (67), Expect = 0.015
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Frame = +2
Query: 167 IVVNLTLHLRHA---NIRESESTVRIQADLQMNXIDKRLSXNXGEWGCSTWL-VSSERLW 334
+VV L L L N+++ T + L+ D + + E+G T L V SE +W
Sbjct: 46 VVVKLGLRLSQLIDLNLKDQILTTNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIW 103
Query: 335 MPDXVLLNXXXXTXGGLRSPXPRYLXTGSXSW 430
+PD VL N G TG W
Sbjct: 104 LPDIVLYNNADGEYGVTTMTKAILHYTGKVLW 135
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 26.6 bits (56), Expect = 0.31
Identities = 14/63 (22%), Positives = 26/63 (41%)
Frame = +2
Query: 206 IRESESTVRIQADLQMNXIDKRLSXNXGEWGCSTWLVSSERLWMPDXVLLNXXXXTXGGL 385
I E + T + + + +D+RL+ G+ + + R+W PD N +
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGGKETLALSISMLARIWKPDTYFYNGKHSYLHTI 103
Query: 386 RSP 394
SP
Sbjct: 104 TSP 106
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 26.2 bits (55), Expect = 0.42
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +2
Query: 170 VVNLTLHLRH-ANIRESESTVRIQADLQMNXIDKRLSXNX--GEWGCSTWLVSSERLWMP 340
+V + L +R A I + + +Q + +D+RL N G T L + R+WMP
Sbjct: 60 IVRVNLFVRSIATISDIKMEYSVQLTFREQWLDERLRFNDFGGRLKYLT-LTDASRVWMP 118
Query: 341 DXVLLN 358
D N
Sbjct: 119 DLFFSN 124
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 26.2 bits (55), Expect = 0.42
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +2
Query: 164 KIVVNLTL-HLRHANIRESESTVRIQADLQMNXIDKRLSXNXGEWG-CSTWLVSSERLWM 337
K+ VN L ++ N+ E ++ L+ D +L + ++G + +++W
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 338 PDXVLLN 358
PD VL N
Sbjct: 111 PDIVLFN 117
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 25.8 bits (54), Expect = 0.55
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 245 LQMNXIDKRLSXNXGEWGCSTWL-VSSERLWMPDXVLLN 358
++ + D +L + E+G L V S+ +W PD VL N
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYN 115
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 25.4 bits (53), Expect = 0.73
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +2
Query: 164 KIVVNLTL-HLRHANIRESESTVRIQADLQMNXIDKRLSXNXGEWGCSTWL-VSSERLWM 337
++ + L L L N++ T + ++ + D +L E+G L V S+ +W
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 338 PDXVLLN 358
PD VL N
Sbjct: 113 PDIVLYN 119
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 25.4 bits (53), Expect = 0.73
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +2
Query: 164 KIVVNLTL-HLRHANIRESESTVRIQADLQMNXIDKRLSXNXGEWGCSTWL-VSSERLWM 337
++ + L L L N++ T + ++ + D +L E+G L V S+ +W
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 338 PDXVLLN 358
PD VL N
Sbjct: 113 PDIVLYN 119
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.96
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Frame = +2
Query: 167 IVVNLTLHLRHANIRESESTVRIQADLQMNXIDKRLSXNXGEW-GCSTWLVSSERLWMPD 343
+V L+LH ++ E + + D L N E+ G V R+W PD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 344 XVLLN 358
+L N
Sbjct: 92 TILYN 96
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 23.4 bits (48), Expect = 2.9
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +2
Query: 170 VVNLTLHLRH-ANIRESESTVRIQADLQMNXIDKRLSXNX--GEWGCSTWLVSSERLWMP 340
VV + + +R + I + +Q + +D+RL N G T L + R+WMP
Sbjct: 60 VVRVNIFVRSISKIDDVTMEYSVQLTFREQWLDERLRFNDFGGRLKYLT-LTDASRVWMP 118
Query: 341 DXVLLN 358
D N
Sbjct: 119 DLFFSN 124
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,712
Number of Sequences: 438
Number of extensions: 2586
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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