Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_M16
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.37 
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    28   1.5  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    26   6.0  
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    26   6.0  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   6.0  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    26   7.9  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    26   7.9  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 240 VRVHRANTGRSSNELDRQTTELERR 314
           +R H+ + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 164 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNR 66
           Y    ES + D+ +  SH+ A +I Q  R+G R
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +2

Query: 458 KRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDXXI*QKNXXXCSKSGTVGCD 631
           K LD S+  SM++++W N       +  SR+H S  +     ++N    S S +VG D
Sbjct: 162 KFLDKSSG-SMEIESWDNSTSDSIIESSSRLHESISL-----RENDIRSSDSKSVGWD 213


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 19/74 (25%), Positives = 36/74 (48%)
 Frame = +1

Query: 241 SESTVRIQADLQMNWIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALR 420
           S +++R  A  + + +  +L  N G+W   TW  +  R W  DV +  ++  +   + LR
Sbjct: 160 SPASLRETAAKEYDALTSKLG-NTGDWIYDTWSDNELRTWLHDVGVPISSHESTRSHLLR 218

Query: 421 ARVSNNGSVSWDKA 462
            ++ N  S   D+A
Sbjct: 219 -KLKNYISTKADEA 231


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 377 C*TRLQPPPGTTLSAPVYLITAPSPGIKRLDISTP 481
           C   L+PPP   + +  Y ++ PSP +    IS P
Sbjct: 149 CQPVLRPPPVPQVPSHWYPVSLPSPNLPHQPISKP 183


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 455 IKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHN 556
           +KR DI    +   DNW ND+  C  + G  +H+
Sbjct: 600 VKRYDIHRVFA---DNWINDISMCHMENGKVIHS 630


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 46   MSTTYIILLPFLLTCAIASAAECENATSLS 135
            +S TYIILLPF   C     A  +++  +S
Sbjct: 1023 LSKTYIILLPFQSLCPGGKQANHQSSEKMS 1052


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,023,460
Number of Sequences: 5004
Number of extensions: 58356
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)