Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_M15
         (849 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   282   2e-76
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   274   6e-74
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   256   2e-68
At2g22340.1 68415.m02651 hypothetical protein                          33   0.32 
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    32   0.42 
At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   2.2  
At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin fa...    29   5.2  
At2g34150.1 68415.m04180 expressed protein                             29   5.2  
At2g03340.1 68415.m00293 WRKY family transcription factor contai...    29   5.2  
At4g35240.1 68417.m05009 expressed protein contains Pfam domains...    28   6.8  
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha...    28   6.8  
At2g17110.1 68415.m01974 expressed protein                             28   9.0  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  282 bits (692), Expect = 2e-76
 Identities = 130/214 (60%), Positives = 162/214 (75%), Gaps = 1/214 (0%)
 Frame = +3

Query: 87  LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 266
           L+  E DV  M AA  HLG +N N+QME YV+KRR DG ++ NL +TWEKL +AAR +VA
Sbjct: 12  LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71

Query: 267 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 446
           IENP D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72  IENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDP 131

Query: 447 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 626
             DHQPI E +  NIP+IA C+TDSP+RFVDI IP N K  HSIG ++WLLAR VL++RG
Sbjct: 132 RTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 191

Query: 627 VLPRDQRWDVVVDLSFYRDPEXSE-KDEXQAKEQ 725
            +   Q+WDV+VDL FYR+PE ++ +DE +A  Q
Sbjct: 192 TIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQ 225


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  274 bits (671), Expect = 6e-74
 Identities = 123/208 (59%), Positives = 157/208 (75%)
 Frame = +3

Query: 99  EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 278
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76

Query: 279 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 458
            D+ V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  DH
Sbjct: 77  KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136

Query: 459 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPR 638
           QPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLAR VL++RG +  
Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILA 196

Query: 639 DQRWDVVVDLSFYRDPEXSEKDEXQAKE 722
            Q+WDV+VDL FYR+PE ++++  +  E
Sbjct: 197 AQKWDVMVDLFFYREPEEAKQEGDEEAE 224


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  256 bits (626), Expect = 2e-68
 Identities = 115/189 (60%), Positives = 144/189 (76%)
 Frame = +3

Query: 99  EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 278
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76

Query: 279 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 458
            D+ V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  DH
Sbjct: 77  KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136

Query: 459 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPR 638
           QPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLAR VL++RG +  
Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILA 196

Query: 639 DQRWDVVVD 665
            Q+WDV+V+
Sbjct: 197 AQKWDVMVN 205


>At2g22340.1 68415.m02651 hypothetical protein
          Length = 358

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 137 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 256
           SW     LP+GD  +Q  C WY   +  S +G+  +   C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 420 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 569
           P  ++V D  +    I EAS + IPV+A+ + + PL F + I  P   + S
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 375 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 476
           TP   TNQ++ A  E     +LDP     PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653


>At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin
           family protein contains Pfam domain, PF01190: Pollen
           proteins Ole e I family
          Length = 146

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +3

Query: 516 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 653
           D  L   ++A+ C TKS   +    +  ++ V  +   +P  +RWD
Sbjct: 49  DHVLEGAEVAVLCITKSGEVVNYQAFTNSKGVYTVAETMPESERWD 94


>At2g34150.1 68415.m04180 expressed protein
          Length = 700

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = -2

Query: 548 DSNVHKS*WGVCVAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTW 378
           D  +H+  W      S   +     FSN L  +  +Q +QE+   E S D  S  TW
Sbjct: 308 DELIHQDPWAASEISSGTHSYSN-GFSNPLYDISGIQEHQESEEVESSCDTESIKTW 363


>At2g03340.1 68415.m00293 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 513

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -2

Query: 680 TVEGQINHNIPALVTGKHTTKP--QHFTCQQPPHQTNRVGRL 561
           T EG+ NH++PA  T  H  +P  QH T     +    V RL
Sbjct: 464 TYEGKHNHDVPAARTSSHQLRPNNQHNTSTVNFNHQQPVARL 505


>At4g35240.1 68417.m05009 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 828

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +3

Query: 633 PRDQRWDVVVDLSFYRDPEXSEKDEXQAKEQXGVP 737
           PR   WD +     Y  P    +D  + +E+ G+P
Sbjct: 273 PRSNGWDFLNPFDTYYPPYTPSRDSRELREEEGIP 307


>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
           A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
           from [Arabidopsis thaliana]
          Length = 78

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +2

Query: 203 PCDQLASYLGKTCSGCSCCRSHREPR*CVRHLITALRSACC 325
           P  Q   Y GK  +     + +   R  V HL+ ALR  CC
Sbjct: 38  PVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGGCC 78


>At2g17110.1 68415.m01974 expressed protein
          Length = 733

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +3

Query: 633 PRDQRWDVVVDLSFYRDPEXSEKDEXQAKEQXGVP 737
           PR++ WD +     Y  P    +D  + +++ GVP
Sbjct: 178 PREKVWDFLDPFDTYYTPYTPSRDTRELRDELGVP 212


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,472,133
Number of Sequences: 28952
Number of extensions: 418345
Number of successful extensions: 972
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)