Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_M13
(822 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 355 1e-96
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 321 1e-86
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 246 5e-64
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 243 5e-63
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 210 3e-53
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 153 7e-36
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 107 4e-22
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 106 8e-22
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 101 2e-20
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 98 2e-19
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 96 8e-19
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 92 1e-17
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 91 2e-17
UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; ... 90 5e-17
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 88 3e-16
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 87 7e-16
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 85 2e-15
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 84 5e-15
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 82 2e-14
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 76 1e-12
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 72 2e-11
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 67 6e-10
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 60 7e-08
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 59 2e-07
UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN full-le... 40 0.075
UniRef50_A7TI46 Cluster: Putative uncharacterized protein; n=1; ... 37 0.53
UniRef50_Q1EYM9 Cluster: Purine catabolism PurC-like; n=2; Clost... 36 1.2
UniRef50_Q69NC6 Cluster: Putative uncharacterized protein OJ1742... 36 1.6
UniRef50_Q9MAP1 Cluster: Putative F-box protein At1g33020; n=4; ... 35 2.1
UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1; ... 34 3.7
UniRef50_UPI00015B6051 Cluster: PREDICTED: similar to ENSANGP000... 34 4.9
UniRef50_A6Q7D5 Cluster: Putative uncharacterized protein; n=1; ... 34 4.9
UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsi... 33 8.6
UniRef50_Q0ITV5 Cluster: Os11g0213700 protein; n=3; Oryza sativa... 33 8.6
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 355 bits (872), Expect = 1e-96
Identities = 157/237 (66%), Positives = 186/237 (78%)
Frame = +2
Query: 47 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 226
F P HGS+GF P+KRS RHRGKVK+FPKDDPSKPVHLTAF+GYKAGMTH+VRE DRPGS
Sbjct: 6 FSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGS 65
Query: 227 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 406
K+NKKE+VEAVTI+ETPPMV VG+VGY+ETP GLR TV+AEH+S++C+RRFYKNW+
Sbjct: 66 KVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKS 125
Query: 407 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 586
WQDE G+K +EKDF M +YC V+RVIAHTQM+LL RQKKAH+MEIQ+
Sbjct: 126 KKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQV 185
Query: 587 NGGTIEDKVRWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR 757
NGGT+ +K+ WARE LE+ +PV+ VF QDEMID I SRWHTKKLPR
Sbjct: 186 NGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPR 242
Score = 49.6 bits (113), Expect = 9e-05
Identities = 19/26 (73%), Positives = 23/26 (88%)
Frame = +3
Query: 744 RSYPVKTHKGLRKVACIGAWHPSRVS 821
+ P KTH+GLRKVACIGAWHP+RV+
Sbjct: 238 KKLPRKTHRGLRKVACIGAWHPARVA 263
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 321 bits (789), Expect = 1e-86
Identities = 145/237 (61%), Positives = 175/237 (73%)
Frame = +2
Query: 47 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 226
F P HG +GF P KRS RHRGKVK +P+DDPS+PVHLTAF+GYKAGMTH +RE RPG
Sbjct: 6 FSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGL 65
Query: 227 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 406
KI+K+E VEAVTI+ETPP+V VGVVGY+ TP GLR+ T++AEH+S++CRRRFYK+W+
Sbjct: 66 KISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHKS 125
Query: 407 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 586
W+D G+K ++KDF M +YC V+RVI HTQMKLL RQKKAHIMEIQL
Sbjct: 126 KKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHIMEIQL 185
Query: 587 NGGTIEDKVRWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR 757
NGGT+ +KV WA+ LEK +PV SVF Q E+ID I SRWHTKKLPR
Sbjct: 186 NGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPR 242
Score = 50.4 bits (115), Expect = 5e-05
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +3
Query: 744 RSYPVKTHKGLRKVACIGAWHPSRV 818
+ P KTHKGLRKVACIGAWHP+RV
Sbjct: 238 KKLPRKTHKGLRKVACIGAWHPARV 262
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 246 bits (602), Expect = 5e-64
Identities = 107/163 (65%), Positives = 127/163 (77%)
Frame = +2
Query: 47 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 226
F P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 227 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 406
K+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY NW
Sbjct: 66 KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKS 125
Query: 407 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM 535
WQDE G+K IE DF K+ +YCS +RVIAHTQM
Sbjct: 126 KKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
Score = 52.0 bits (119), Expect = 2e-05
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = +3
Query: 744 RSYPVKTHKGLRKVACIGAWHPSRVS 821
+ P KTHKGLRKVACIGAWHPSRV+
Sbjct: 190 KKLPRKTHKGLRKVACIGAWHPSRVA 215
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 243 bits (594), Expect = 5e-63
Identities = 115/240 (47%), Positives = 152/240 (63%), Gaps = 3/240 (1%)
Frame = +2
Query: 47 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 226
F+HP HG +GF P+KRSR+ RG+ ++FPKDDPS+ HLT+F+ YKAGMTH+VR+ DRPGS
Sbjct: 57 FEHPRHGHLGFLPRKRSRQIRGRARSFPKDDPSQKPHLTSFMVYKAGMTHIVRDVDRPGS 116
Query: 227 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 406
K+NKKE+VE VTI+E PPMV VG+VGY +TP G + + TVWA H S + RRRFYKNW
Sbjct: 117 KVNKKEVVEPVTILEAPPMVVVGIVGYRQTPVGHKTIGTVWAHHTSVEFRRRFYKNWKQS 176
Query: 407 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQ---KKAHIME 577
+ GR + + K + ++RV+AHTQ++ L+ + KKAH+ E
Sbjct: 177 AQLAFTKRKQFARTTEGRLAEARTLKAFEKKADIIRVVAHTQLRKLRNNRVGVKKAHVSE 236
Query: 578 IQLNGGTIEDKVRWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR 757
IQ+NGGTI K+ A+ LEK + +DSVF Q E D RW LPR
Sbjct: 237 IQINGGTIAQKIELAKSLLEKEVRIDSVFQQSEACDVCAVTKGHGFTGVVKRWGVACLPR 296
Score = 50.0 bits (114), Expect = 7e-05
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = +3
Query: 753 PVKTHKGLRKVACIGAWHPSRV 818
P KTH+GLRKVACIGAWHPSRV
Sbjct: 295 PRKTHRGLRKVACIGAWHPSRV 316
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 210 bits (513), Expect = 3e-53
Identities = 97/183 (53%), Positives = 127/183 (69%)
Frame = +2
Query: 44 NFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 223
NF P HGS+GF P+K S H GKVK FPKDD SKPVHLT F+ +KA MTH++++ DRP
Sbjct: 5 NFSAPRHGSLGFSPQKHSCWHHGKVKLFPKDDSSKPVHLTDFLVHKANMTHIIQKVDRPE 64
Query: 224 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYX 403
SK+NKKE+VE V I+ETPPMV +G+VGYIE P GL V+AEH+S ++ FYKNW+
Sbjct: 65 SKMNKKEVVEGVAIVETPPMVVMGIVGYIEIPRGLWTFKAVFAEHISGKSKKCFYKNWHS 124
Query: 404 XXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQ 583
++G++ +E +FK M +YC V+ ++AHTQM LL QKKAH+MEIQ
Sbjct: 125 EKKASTKYF------DMGKRQLEMEFKSMKKYCQVICIVAHTQMCLLSLHQKKAHLMEIQ 178
Query: 584 LNG 592
+ G
Sbjct: 179 VMG 181
Score = 33.1 bits (72), Expect = 8.6
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +3
Query: 732 VGTQRSYPVKTHKGLRKVACIGAWHPSRVS 821
V QR+ P + +G K+ C+GAWHP+RV+
Sbjct: 214 VDIQRNCPERPIEGCPKL-CVGAWHPARVT 242
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 153 bits (370), Expect = 7e-36
Identities = 91/222 (40%), Positives = 125/222 (56%)
Frame = +2
Query: 89 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTII 268
K S +H+GKV FPKD SKPV+L+AF+GY+AGMTHVVR+ DRPGSK++KKE+VE VTI+
Sbjct: 1 KCSSQHQGKVTGFPKDGSSKPVYLSAFLGYQAGMTHVVRKVDRPGSKVHKKEVVEVVTIV 60
Query: 269 ETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQD 448
ET P + VG VG ET GL+ +V+A+H+S +C+R K Y W+
Sbjct: 61 ETMPFMTVGTVGCTETIWGLQTFKSVFAKHISNECKRTGIK--YKTNTSPNTKARSSWR- 117
Query: 449 ELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVRWARE 628
G ++ TQM LL QKKAH+ E Q+N G + K+ WA +
Sbjct: 118 --GTSAL-------------------TQMCLLPLCQKKAHLTESQVNRGPVA-KLDWAHK 155
Query: 629 HLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLP 754
LE+ +PV+ +F + I S W+TKK+P
Sbjct: 156 KLEQQVPVNHIFRVRRLF-VIGTTKGKHYKGISSHWYTKKVP 196
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 107 bits (256), Expect = 4e-22
Identities = 83/238 (34%), Positives = 120/238 (50%), Gaps = 4/238 (1%)
Frame = +2
Query: 56 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 235
P GS+GF P+KR+ R +VK +P+ D KPV L AF+GY+AGMTHV DRPG +
Sbjct: 9 PRRGSLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVDDRPGRPTS 67
Query: 236 KKEIVEAVTIIETPPMVCVGVVGYIETPH-GLRALLTVWAEHMSE-DCRRRFYKNWYXXX 409
KEI VTI+ETPPM V Y P+ G +L WA+ E + +RR
Sbjct: 68 GKEIFVPVTIVETPPMFVAAVRLYGYDPNRGRYSLGEAWAQPPPELELQRRI-------- 119
Query: 410 XXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLL-KQRQKKAHIMEIQL 586
+ + KS+E+ K VR+IA +Q KL +KK ++EI++
Sbjct: 120 -----STLGSFDTDKMLKSLEERLDK----AEDVRLIAASQPKLAGGLSKKKPDLLEIKV 170
Query: 587 NGGTIEDKV-RWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR 757
G + K+ +A++ L I V+ VF + +++D I RW K+LPR
Sbjct: 171 GGVSDVTKLFDYAKDVLGNLIAVNDVFEEGQLVDVIAVTKGKGFQGVIKRWGVKELPR 228
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 106 bits (254), Expect = 8e-22
Identities = 72/236 (30%), Positives = 118/236 (50%), Gaps = 2/236 (0%)
Frame = +2
Query: 44 NFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 223
N P GS+ F P+KR++R +++++P++D V L AF YKAGM+H + D P
Sbjct: 4 NINRPRRGSLAFSPRKRAKRPVPRIRSWPEEDT---VRLQAFPVYKAGMSHAFIKEDNPK 60
Query: 224 SKINKKEIVEAVTIIETPPM-VC-VGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNW 397
S +E+ +TI+E PP+ VC + V G E + L L VWA+++ ++ R+
Sbjct: 61 SPNAGQEVFTPITILEAPPINVCAIRVYGRNERNY-LTTLTEVWADNLDKELERKI---- 115
Query: 398 YXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIME 577
+ RK++E D + + VRV+ HT KL +KK I+E
Sbjct: 116 -------------KLPKKEDRKTVE-DLEALKDKIEDVRVLVHTNPKLTCLPKKKPEILE 161
Query: 578 IQLNGGTIEDKVRWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTK 745
I++ G IE+++ +A+E L K + + VF + E++D I RW K
Sbjct: 162 IRIGGKDIEERLNYAKEILGKQLNITDVFQEGELVDTIGVTKGKGFQGQVKRWGVK 217
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 101 bits (242), Expect = 2e-20
Identities = 68/219 (31%), Positives = 107/219 (48%), Gaps = 7/219 (3%)
Frame = +2
Query: 56 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 235
P GSMGF P+KR+ R G++ ++P+ + S+ + + F G+KAGMTHV+ P S
Sbjct: 7 PKRGSMGFSPRKRAIRPFGRITSWPETESSE-IRVQGFAGWKAGMTHVLMRDTNPHSTSA 65
Query: 236 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMS--EDCRRRFYKNWYXXX 409
+EI +AVT++E PPM + V GY TP+G++ +WA+ S + RF
Sbjct: 66 GQEIRKAVTVVEVPPMKVLAVRGYHMTPYGMQTAGEIWADSSSGPDGLMPRFANQTRGDR 125
Query: 410 XXXXXXXXXXWQDELGRK--SIEKDFKKMIRYCSV--VRVIAHTQMKLLKQRQKKAH-IM 574
+ + + D + ++ VR+I TQ L+K K IM
Sbjct: 126 DIEEGRKPAKRAGRIPVREGGMNGDALAALTDSNLCEVRLIVATQPALVKSVPSKTPVIM 185
Query: 575 EIQLNGGTIEDKVRWAREHLEKPIPVDSVFXQDEMIDCI 691
E+ L GG K+ WA E L I +D V+ + +D +
Sbjct: 186 EVGLVGGDTGAKLEWAHERLGGEIGIDDVYEAGKELDVV 224
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 98.3 bits (234), Expect = 2e-19
Identities = 70/213 (32%), Positives = 101/213 (47%), Gaps = 1/213 (0%)
Frame = +2
Query: 56 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 235
P GSMGF P+KR+ R G+VK++P+ D S V + F G+KAGMTHV+ PGS
Sbjct: 7 PKKGSMGFGPRKRANRPYGRVKSWPETD-SDEVRVQGFAGWKAGMTHVMMRDLNPGSPSA 65
Query: 236 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 415
E+ +AVT++E PPM + V GY TP+G + WA S D +
Sbjct: 66 GAEVRKAVTVVEVPPMRVLAVRGYKMTPYGKQTAGEAWA---SADKLSDVIPSLPRRIPE 122
Query: 416 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM-KLLKQRQKKAHIMEIQLNG 592
D+L + + VR+I +Q K+ K IME+ L G
Sbjct: 123 RKEHDANAHLDKLRESDLAE-----------VRLIVSSQPDKVSAVGSKSPEIMEMGLTG 171
Query: 593 GTIEDKVRWAREHLEKPIPVDSVFXQDEMIDCI 691
G + ++ WA E L + + ++ VF ID I
Sbjct: 172 GDLGAQLDWAAEKLGEELGIEDVFESGSDIDVI 204
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 96.3 bits (229), Expect = 8e-19
Identities = 73/249 (29%), Positives = 114/249 (45%), Gaps = 10/249 (4%)
Frame = +2
Query: 56 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 235
P GS+GF P+KR++ +++++PK+ V + F GYKAGMTH++ D PG N
Sbjct: 7 PRRGSLGFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG-LTN 62
Query: 236 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSED---CRRRFYK----- 391
KEI VTIIETPP+ G+ Y GL V D + R K
Sbjct: 63 GKEIFMPVTIIETPPLRVFGIRAYRMGYLGLETATEVIVPDFPLDNYPAKERKGKPKPKM 122
Query: 392 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSV--VRVIAHTQMKLLKQRQKKA 565
+Y + E+ + + + + MI+ + VR I TQ ++K + KK
Sbjct: 123 TFYKLLERRIATLPKNYTQEMFEQKLGQ-LEDMIKEGEIVDVRAIVATQPWVIKLK-KKP 180
Query: 566 HIMEIQLNGGTIEDKVRWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTK 745
+ME + G ++E+K + +E L K + V V + E++D I RW K
Sbjct: 181 EVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIK 240
Query: 746 KLPR*DTQG 772
D++G
Sbjct: 241 LRAHKDSKG 249
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 92.3 bits (219), Expect = 1e-17
Identities = 68/234 (29%), Positives = 107/234 (45%)
Frame = +2
Query: 56 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 235
P GS +YP+KR+R +V+ +P++ F GYK GM HV+ S
Sbjct: 7 PRRGSRAYYPRKRARSIVARVRRWPQNREG----FLGFAGYKVGMLHVIGVEMNKNSPFY 62
Query: 236 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 415
+E A T+IE PP+ V V Y +TP+G + L VWA+ + +D R F
Sbjct: 63 GQERFYAATVIEVPPLKVVAVRVYEKTPYGKKTLCEVWAKDLPKDLERVF---------- 112
Query: 416 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGG 595
+D+ + K +++ S VRV+A TQ +L +KK ++EI + GG
Sbjct: 113 ------PLPKDQSYHEEQLKKLEEVKSRVSEVRVLAATQPRLSGLGKKKPELIEIAV-GG 165
Query: 596 TIEDKVRWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR 757
E + A E L K + + VF + + ID I R+ +++PR
Sbjct: 166 PPEKALSLALEKLGKDLTISDVFKEGDYIDVIAVTKGKGFQGSVKRFGVEEMPR 219
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 91.5 bits (217), Expect = 2e-17
Identities = 64/227 (28%), Positives = 99/227 (43%)
Frame = +2
Query: 56 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 235
P GS+ F P+KR+ R +++++P ++ V + F GYKAGMTH + D P S
Sbjct: 12 PRRGSLAFSPRKRASRPVPRIRSWPDEER---VRVQGFAGYKAGMTHAIMIDDWPNSPTE 68
Query: 236 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 415
+EI VTI++ PPM + Y TP G R + WAE E R +
Sbjct: 69 GEEISVPVTILDAPPMYVAAIRAYAPTPDGYRCVTEAWAEIPEELEMDRVF-----TVPK 123
Query: 416 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGG 595
+EL + I ++ +RVI TQ K +KK +ME ++ G
Sbjct: 124 DGEAGDLDKIEELVDEGIVEE----------IRVIVATQPKKAGVPKKKPDVMEYRIGGK 173
Query: 596 TIEDKVRWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRW 736
+ ++ +A E L + I VF + E++D RW
Sbjct: 174 DVRERFEYAVEILSEEIRAKDVFDEGEIVDVSAITKGKGFQGVVKRW 220
>UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 173
Score = 90.2 bits (214), Expect = 5e-17
Identities = 52/137 (37%), Positives = 71/137 (51%)
Frame = -3
Query: 745 LCVPTRSDTFVSFALGDTNAVNHFILXKHRIDRDRFLQMFSGPSHFVLDGTTVKLDFHNV 566
L P+ DT + GD+N +NHFIL ++R++R+ F ++F GP +FV DGTTV LDF V
Sbjct: 39 LGTPSVGDTLETVTFGDSNDINHFILFENRVNRNFFFKVFFGPVNFVGDGTTVDLDFSQV 98
Query: 565 XXXXXXXXXXXXSVGNDSYNTTVADHLLEIFFY*FASKLILPFLTGFSESLLLAFVPVFV 386
V DS N +V + F F + F F E LL F+PV V
Sbjct: 99 SFLLRQWSLLDLGVSQDSDNRSVLLDSGQFSFNLFGVSGV--FTRVFGEGFLLGFIPVLV 156
Query: 385 EATSTVFRHMLRPDSQQ 335
E++S F + PDS Q
Sbjct: 157 ESSSDFFTQVFSPDSGQ 173
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 87.8 bits (208), Expect = 3e-16
Identities = 75/278 (26%), Positives = 124/278 (44%), Gaps = 41/278 (14%)
Frame = +2
Query: 47 FQHPXHGSMGFYPKKRSRRHRGKVKAFP------------------KDDPSKPVHLTAFI 172
+ P HGS+G P+KR+ + +++++P K KPV L ++
Sbjct: 6 YSAPRHGSLGVRPRKRAAKIVPRIRSWPTQSWFDLLVEKLGDEAVNKGIAPKPV-LLGYV 64
Query: 173 GYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGY-IETPHGLRALLTVW 349
YKAGM+H + DRP + + KEI VT+++ PP++ +G+ GY I HGL + VW
Sbjct: 65 AYKAGMSHAIIIDDRPHTFTSGKEIAIPVTVLDAPPILILGLRGYKIHPMHGLLSFGEVW 124
Query: 350 ---AEHMSEDCRRRFYKNWYXXXXXXXXXXXXXW--------------QDELGRKSIEKD 478
E + E + + N + E G K +E +
Sbjct: 125 RSPVEALKELYEKIYSDNPFINLGAKDIVRKYLKGLRKVNPGLVKPEPHSEYGFKFLENN 184
Query: 479 FKKMIRYCSV-----VRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVRWAREHLEKP 643
+K+ + +RVIA T L +KK I+EI++ GGT+ +++ +A + L
Sbjct: 185 WKEKLERLKAAELADIRVIASTIPVLSGIGKKKPEIIEIKIGGGTLSERIDYAEKLLGNY 244
Query: 644 IPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR 757
+ VD VF + + ID I R+ K+LPR
Sbjct: 245 VTVDQVFREGQFIDIIGVTKGKGFQGVIKRFGVKELPR 282
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 86.6 bits (205), Expect = 7e-16
Identities = 72/234 (30%), Positives = 99/234 (42%), Gaps = 3/234 (1%)
Frame = +2
Query: 56 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 235
P GSMGF P+KR+ + ++P DD V L F GYKAGMTHVV D+ +
Sbjct: 7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTE 64
Query: 236 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 415
E VT++ETPPM V Y +TP+G + L VWA+ E R
Sbjct: 65 GMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDRTL---------- 114
Query: 416 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHT-QMKLLKQRQKKAHIMEIQLNG 592
DEL IE + I + +RVI HT +K +ME ++ G
Sbjct: 115 -SVPDEGGDTDEL----IEALDTEEI---ADIRVITHTVPGDTAGVPKKNPDVMETRVGG 166
Query: 593 GTIEDKVRWAREHLEK--PIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKK 748
GT+ D++ +A + +E VF E D RW +K
Sbjct: 167 GTLADRLEFAADLIEDGGVHAFGDVFRAGEFTDAAGITKGKGTQGPVKRWGVQK 220
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 85.0 bits (201), Expect = 2e-15
Identities = 64/239 (26%), Positives = 109/239 (45%), Gaps = 5/239 (2%)
Frame = +2
Query: 56 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 235
P GS G P+KRS + +P+ + P L F+GYK GMTHV D P S N
Sbjct: 9 PRRGSAGLRPRKRSSELLPTPRTWPQINSQNP-KLLGFVGYKVGMTHVFMIDDWPNSPTN 67
Query: 236 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLT-VWAEHMSE--DCRRRFYK-NWYX 403
KEI VT++E PP++ + + Y G ++T W+ + D RR + + +
Sbjct: 68 GKEIYMPVTVLEVPPIIPLALRAYAIDGKGEPNVITEYWSSSSLQFLDITRRIHSISSFL 127
Query: 404 XXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKA-HIMEI 580
+ +L I+ + +++ + R++ TQ + + KKA ++EI
Sbjct: 128 KDDESKKKFDERFNTKL--DLIKSNLDRIVYF----RLLVSTQPRKIPSLGKKAPDLVEI 181
Query: 581 QLNGGTIEDKVRWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR 757
Q+ GG + ++ +A L K I + VF + ++ID + R+ +LPR
Sbjct: 182 QIGGGEKKSQLDYALNILGKEITIRDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPR 240
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 83.8 bits (198), Expect = 5e-15
Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 1/232 (0%)
Frame = +2
Query: 56 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 235
P GS+ + P+ R++ +++A+PK D +P + A G+KAG +V DR
Sbjct: 9 PRRGSLAYSPRVRAKSMEARIRAWPKLDSEEP-KILAHCGFKAGCVQIVSIDDREKVPNA 67
Query: 236 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRF-YKNWYXXXX 412
K++V T++ TPP++ +G+ GY + GL A V+AE + + + KN
Sbjct: 68 GKQLVSLGTVLVTPPVLILGIRGYSKDHDGLHAEFDVYAEDIPKSIAKEISLKN------ 121
Query: 413 XXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNG 592
+ E + EK KK+ ++V I+ + L QKK +I E ++G
Sbjct: 122 ----------KQENALDNAEKSLKKIKEIFAIV-AISPSAAGL---EQKKPYIFEASVSG 167
Query: 593 GTIEDKVRWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKK 748
G I + +E L K I +D +F +D RW+ KK
Sbjct: 168 GDIPKQFAHVKELLGKEIKIDQIFETGASVDVAAITKGKGWQGVLKRWNVKK 219
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 81.8 bits (193), Expect = 2e-14
Identities = 67/245 (27%), Positives = 113/245 (46%), Gaps = 11/245 (4%)
Frame = +2
Query: 56 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 235
P GS G P+KR+ +V+++P D KP+ AF+GYK GMTHV+ DR
Sbjct: 9 PRRGSAGLRPRKRAASIVPRVRSWPSIDEVKPL---AFLGYKVGMTHVIMIDDREHVDTA 65
Query: 236 KKEIVEAVTIIETPPMVCVG--VVGYIETPHGLRALLTVW-------AEHMSEDCRRRFY 388
+EI VT+IETPPMV +G V GY + G AL VW E + E+ R++
Sbjct: 66 GQEIFVPVTVIETPPMVVLGARVYGY-DPNRGRYALTEVWRNPSDTIKEKLGEEVLRKYL 124
Query: 389 --KNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKK 562
+ ++ ++ K ++ D +K++ ++ I + K K
Sbjct: 125 LGMSKRLPHMVEELGPGKGFEFKVPEKELDVDPEKVVGVGLIMSSIPFLAGGVSK---KA 181
Query: 563 AHIMEIQLNGGTIEDKVRWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHT 742
I+E+++ G +E + +A+ L + + V+ V + +D I R+
Sbjct: 182 PDILEVKVGGSPVE-ALEYAKGKLGQLVDVEEVIEAGKFVDVIGVTKGKGFQGVIKRFGV 240
Query: 743 KKLPR 757
K+LP+
Sbjct: 241 KELPK 245
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 75.8 bits (178), Expect = 1e-12
Identities = 56/213 (26%), Positives = 99/213 (46%), Gaps = 3/213 (1%)
Frame = +2
Query: 56 PXHGSMGFYPKKRSRRHRGKVKAFPK--DDPSKPVHLTAFIGYKAGMTHVVREPDRPGSK 229
P GS+G+ P+ R+R + K++ + + D P + F+G+KAGM+H+V DRP S
Sbjct: 7 PRRGSLGYSPRVRARSQKPKMRNWAELGDQPK----IQGFVGFKAGMSHIVMVDDRPHSA 62
Query: 230 INKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSE-DCRRRFYKNWYXX 406
EI VTI+E P M G+ Y ++P+G + + W + + KN Y
Sbjct: 63 TEGMEISVPVTIVEAPQMHVAGIRVYDDSPYGKKVIGEAWISDLKMLESLTHLPKNGYK- 121
Query: 407 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 586
DE K E K ++ V+ V +++ + +K +ME ++
Sbjct: 122 ------------TDEQLAKIAELVKKGVVADLRVMTVTLTSEVSGIP--KKVPELMENRI 167
Query: 587 NGGTIEDKVRWAREHLEKPIPVDSVFXQDEMID 685
GG + + +A+ + K + + VF E++D
Sbjct: 168 AGGDMAKRFEFAKSLMGKAVGIKDVFAPGELVD 200
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 72.1 bits (169), Expect = 2e-11
Identities = 54/231 (23%), Positives = 102/231 (44%)
Frame = +2
Query: 56 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 235
P GSMGF+P+KR+ R ++K +PK + KP+ AF YK GMTH + IN
Sbjct: 9 PRRGSMGFWPRKRASRIYPRIKTWPKIEEIKPL---AFAAYKVGMTHTI-------LNIN 58
Query: 236 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 415
+ + VT++E P ++ +G Y + L+ + +++ + + R+ K
Sbjct: 59 GERVFTPVTVLEAPELLVIGAKAYKKENGALKEISSLYFNDLPQYVFRKIPK-------- 110
Query: 416 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGG 595
++++ ++ F V++I TQ +K + K I +I + G
Sbjct: 111 ---LKNYNFEEK------KEQFLSKADNADEVKIIVSTQPWKIKLK-KTPEIFDIPIGGS 160
Query: 596 TIEDKVRWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKK 748
+ K+ +A L K + ++ VF + + +D I R+H +
Sbjct: 161 DVNKKLEYALSLLGKELSINDVFKEGQYVDVIAVTKGKGFQGVIKRFHVHR 211
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 66.9 bits (156), Expect = 6e-10
Identities = 57/236 (24%), Positives = 100/236 (42%), Gaps = 1/236 (0%)
Frame = +2
Query: 53 HPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKI 232
H GSM +YP+ R++ +++++P + S PV + F G+K GMTHV R S
Sbjct: 6 HSRRGSMAYYPRVRAKSIEPRIRSWP--EISGPVKVQGFAGFKVGMTHVEMVDYRKTSVT 63
Query: 233 NKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXX 412
+ I VT+IE PP+ +G+ Y E G + V E +++ + +K
Sbjct: 64 AGQPIFVPVTVIEVPPLDVIGIRLYDEDEEG---NMVVVYEKWTQNLDKELFKK------ 114
Query: 413 XXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNG 592
E+ K + + Y V ++A + KK I E+++ G
Sbjct: 115 -------ITTFKEVKEKPVPE------TYADVRLIVATRNKDVPGIPSKKPEIFELRIGG 161
Query: 593 G-TIEDKVRWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR 757
G +++++ +A HL K I + + +D + R+ K LPR
Sbjct: 162 GNSVKERFEYATAHLGKTIRFEDFSKPGKFVDVLSVTKGKGFTGHVQRFGVKLLPR 217
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 60.1 bits (139), Expect = 7e-08
Identities = 34/100 (34%), Positives = 52/100 (52%)
Frame = +2
Query: 47 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 226
F+HP GS+GF PKKRS R K + + +++ F K THV+R + S
Sbjct: 6 FEHPRIGSLGFLPKKRSNRIFPSSKTYKEIIHIYYPYISQFASLKVASTHVLRICNIVSS 65
Query: 227 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTV 346
K + I++ VT++E PP+ VG+ Y + L L T+
Sbjct: 66 KSYQNPIIDEVTLMECPPIEVVGLCAYALSSGHLVKLKTI 105
Score = 44.4 bits (100), Expect = 0.003
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = +3
Query: 753 PVKTHKGLRKVACIGAWHPSRVS 821
P KTH+GLRKVACIG W PSRV+
Sbjct: 223 PRKTHRGLRKVACIGPWTPSRVA 245
Score = 38.3 bits (85), Expect = 0.23
Identities = 23/90 (25%), Positives = 45/90 (50%)
Frame = +2
Query: 488 MIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVRWAREHLEKPIPVDSVFX 667
+I++ + R + T +K +KK + E + GG+ + K+ + + K I ++S+F
Sbjct: 136 IIKHSVIFRFLCCTFIKTNSMIKKK-YFFETDIIGGSPKMKLEFWLKLNNKKIYINSIFH 194
Query: 668 QDEMIDCIXXXXXXXXXXXXSRWHTKKLPR 757
++++ID I SRW +LPR
Sbjct: 195 ENDIIDAIGITKGHGTKGVVSRWGITRLPR 224
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 58.8 bits (136), Expect = 2e-07
Identities = 31/108 (28%), Positives = 56/108 (51%)
Frame = +2
Query: 47 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 226
F P GS+ + P+ R+R +++ +P+ +P L A G+KAG +V DR +
Sbjct: 6 FSQPRRGSLAYSPRGRARSMEARIRGWPERQ-GEP-RLLAHAGFKAGCIQIVSIDDREHT 63
Query: 227 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSED 370
K++V T++ TPP+ +G+ GY + +G V+AE + +
Sbjct: 64 PNAGKQLVSLGTVLVTPPLHVLGMRGYSKGHYGRHVKFDVFAEDLPRE 111
>UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3; n=1;
Mus musculus|Rep: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3 - Mus
musculus (Mouse)
Length = 109
Score = 39.9 bits (89), Expect = 0.075
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +2
Query: 104 HRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKK 241
HR + K FPK+D K HL F+ +A MT+ V E +R G K +K
Sbjct: 8 HRIQAKDFPKEDLPKSAHLIVFLVSRAVMTYFVWEINRSGPKWTRK 53
>UniRef50_A7TI46 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 253
Score = 37.1 bits (82), Expect = 0.53
Identities = 21/77 (27%), Positives = 41/77 (53%)
Frame = +2
Query: 452 LGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVRWAREH 631
L RKSIE + + IR+ +V I +K++++++ + E +L GT + + A
Sbjct: 135 LARKSIEYNTYQSIRFKTVFPDIVEENIKVIEEKKNNQNEKEDELLAGTKKQEDAIANAA 194
Query: 632 LEKPIPVDSVFXQDEMI 682
EKPI ++ + ++ I
Sbjct: 195 KEKPISLEEILDPEDRI 211
>UniRef50_Q1EYM9 Cluster: Purine catabolism PurC-like; n=2;
Clostridiaceae|Rep: Purine catabolism PurC-like -
Clostridium oremlandii OhILAs
Length = 551
Score = 35.9 bits (79), Expect = 1.2
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +2
Query: 503 SVVRVIAHTQMKLLKQRQKKAH--IMEIQLNGGTIEDKVRWAREHLEKPI 646
SV + I + Q LL QR +K H +M + L GG+IED R RE+L P+
Sbjct: 126 SVFKEIFNKQTSLL-QRLEKVHEQLMNVVLEGGSIEDIGRVTRENLRNPL 174
>UniRef50_Q69NC6 Cluster: Putative uncharacterized protein
OJ1742_G01.32; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
OJ1742_G01.32 - Oryza sativa subsp. japonica (Rice)
Length = 100
Score = 35.5 bits (78), Expect = 1.6
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +1
Query: 238 ERDRGGCHHHRDSSDGLCRCCWIH*DPSWTTRSVD 342
E DRG CHH+ S GLCR C + P+ T V+
Sbjct: 36 EGDRGCCHHYLTGSPGLCRRCPLRAHPAATGFEVE 70
>UniRef50_Q9MAP1 Cluster: Putative F-box protein At1g33020; n=4;
Arabidopsis thaliana|Rep: Putative F-box protein
At1g33020 - Arabidopsis thaliana (Mouse-ear cress)
Length = 518
Score = 35.1 bits (77), Expect = 2.1
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = -1
Query: 657 ESTGIGFSRCSLAHLTLSSMVPPLSWISIM*AFFCRCFNSFI 532
E TG+ S+C +HL +S + PL W+SI+ F + SF+
Sbjct: 474 EFTGVKTSKCDTSHLQVSCELSPLCWLSIL-LFLVMVYMSFM 514
>UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1205
Score = 34.3 bits (75), Expect = 3.7
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +2
Query: 89 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH--VVREPDRPGSKINKKEIVEAVT 262
K +++ K+K +++ K + AFI A ++ +R DR ++N I + T
Sbjct: 19 KANKKKAAKLKKLEQNEALKGRNPKAFISQAAYASNRLTIRNLDREAKRVNLPVIDRSGT 78
Query: 263 IIETPPMVCVGVVG 304
+ETPP V + VVG
Sbjct: 79 AVETPPYV-IAVVG 91
>UniRef50_UPI00015B6051 Cluster: PREDICTED: similar to
ENSANGP00000006197; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to ENSANGP00000006197 - Nasonia
vitripennis
Length = 1307
Score = 33.9 bits (74), Expect = 4.9
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = -2
Query: 416 PSSCICTSFCRSDVDSLQTYAPPRQSTERVVHEGSQCIQQHRHKPSEESR 267
PS+ I T SD++ L P QS+ V+ +GS+ HR K SEE R
Sbjct: 840 PSASINTKKYESDIEILSN---PSQSSIEVLDDGSKSTTPHRKKSSEERR 886
>UniRef50_A6Q7D5 Cluster: Putative uncharacterized protein; n=1;
Sulfurovum sp. NBC37-1|Rep: Putative uncharacterized
protein - Sulfurovum sp. (strain NBC37-1)
Length = 135
Score = 33.9 bits (74), Expect = 4.9
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 440 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGG 595
WQD K I+KD+ + YC +R+ H +L ++ K HI+ + G
Sbjct: 29 WQDNSDAKYIQKDWNGAMLYCRQLRLAGHNDWRLPSIKELK-HILSTEPRDG 79
>UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsis
invicta virus 1|Rep: Structural polyprotein - Solenopsis
invicta virus 1
Length = 1137
Score = 33.1 bits (72), Expect = 8.6
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -3
Query: 283 HRRSLDDGDSLHDLFLVDF*TGTVRFSNHVGHTGLITDKSSQMNRFARVV 134
HRR + ++ D+ LVD T++ VG GLITD +S ++ A V
Sbjct: 475 HRRDVTAARAIADMILVDERDATMQVQAEVGGQGLITDIASTVSAVAGAV 524
>UniRef50_Q0ITV5 Cluster: Os11g0213700 protein; n=3; Oryza
sativa|Rep: Os11g0213700 protein - Oryza sativa subsp.
japonica (Rice)
Length = 915
Score = 33.1 bits (72), Expect = 8.6
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -1
Query: 687 QSIISSWXNTESTGIGFSRCSLAHLTLSSMVPPLSWISIM 568
+S+ISSW + TG S CS+ +L + PLS S++
Sbjct: 650 ESVISSWGGSVHTGTSSSSCSVTNLVVKFCTLPLSQWSLL 689
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 842,781,457
Number of Sequences: 1657284
Number of extensions: 17265627
Number of successful extensions: 41536
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 39916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41502
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 70914189703
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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