Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_M13
(822 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi... 297 4e-81
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi... 289 2e-78
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi... 289 2e-78
At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein simil... 31 0.92
At1g29195.1 68414.m03572 expressed protein 30 1.6
At1g77420.1 68414.m09016 hydrolase, alpha/beta fold family prote... 29 4.9
At5g11390.1 68418.m01329 expressed protein 28 6.5
At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein ... 28 6.5
>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
to ribosomal protein GI:806279 from [Arabidopsis
thaliana]
Length = 390
Score = 297 bits (730), Expect = 4e-81
Identities = 135/238 (56%), Positives = 174/238 (73%), Gaps = 1/238 (0%)
Frame = +2
Query: 47 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 226
F+HP HGS+GF P+KR+ RHRGKVKAFPKDDP+KP LT+F+GYKAGMTH+VR+ ++PGS
Sbjct: 6 FEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDVEKPGS 65
Query: 227 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 406
K++KKE EAVTIIETPPMV VGVVGY++TP GLR+L TVWA+H+SE+ RRRFYKNW
Sbjct: 66 KLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYKNWAKS 125
Query: 407 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIMEIQ 583
+ E G+K I+ +KM +YCSV+RV+AHTQ++ +K +QKKAH+ EIQ
Sbjct: 126 KKKAFTRYSKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQKKAHLNEIQ 185
Query: 584 LNGGTIEDKVRWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR 757
+NGG I KV +A EK +PVD++F +DEMID I +RW +LPR
Sbjct: 186 INGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR 243
Score = 50.4 bits (115), Expect = 1e-06
Identities = 20/23 (86%), Positives = 22/23 (95%)
Frame = +3
Query: 753 PVKTHKGLRKVACIGAWHPSRVS 821
P KTH+GLRKVACIGAWHP+RVS
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVS 264
>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 289 bits (708), Expect = 2e-78
Identities = 133/238 (55%), Positives = 171/238 (71%), Gaps = 1/238 (0%)
Frame = +2
Query: 47 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 226
F+HP HGS+GF P+KR+ RHRGKVKAFPKDD +KP TAF+GYKAGMTH+VRE ++PGS
Sbjct: 6 FEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEKPGS 65
Query: 227 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 406
K++KKE EAVTIIETP MV VGVV Y++TP GLR+L TVWA+H+SE+ RRRFYKNW
Sbjct: 66 KLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWAKS 125
Query: 407 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIMEIQ 583
+ E G+K I+ +KM +Y +V+RV+AHTQ++ +K +QKKAH+MEIQ
Sbjct: 126 KKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAHMMEIQ 185
Query: 584 LNGGTIEDKVRWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR 757
+NGGTI KV +A EK IP+++VF +DEMID I +RW +LPR
Sbjct: 186 INGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR 243
Score = 50.4 bits (115), Expect = 1e-06
Identities = 20/23 (86%), Positives = 22/23 (95%)
Frame = +3
Query: 753 PVKTHKGLRKVACIGAWHPSRVS 821
P KTH+GLRKVACIGAWHP+RVS
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVS 264
>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 289 bits (708), Expect = 2e-78
Identities = 133/238 (55%), Positives = 171/238 (71%), Gaps = 1/238 (0%)
Frame = +2
Query: 47 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 226
F+HP HGS+GF P+KR+ RHRGKVKAFPKDD +KP TAF+GYKAGMTH+VRE ++PGS
Sbjct: 6 FEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEKPGS 65
Query: 227 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 406
K++KKE EAVTIIETP MV VGVV Y++TP GLR+L TVWA+H+SE+ RRRFYKNW
Sbjct: 66 KLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWAKS 125
Query: 407 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIMEIQ 583
+ E G+K I+ +KM +Y +V+RV+AHTQ++ +K +QKKAH+MEIQ
Sbjct: 126 KKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAHMMEIQ 185
Query: 584 LNGGTIEDKVRWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR 757
+NGGTI KV +A EK IP+++VF +DEMID I +RW +LPR
Sbjct: 186 INGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR 243
Score = 50.4 bits (115), Expect = 1e-06
Identities = 20/23 (86%), Positives = 22/23 (95%)
Frame = +3
Query: 753 PVKTHKGLRKVACIGAWHPSRVS 821
P KTH+GLRKVACIGAWHP+RVS
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVS 264
>At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein similar
to 2,4-dihydroxydec-2-ene-1,10-dioic acid aldolase
[Sphingopyxis macrogoltabida] GI:23330203; contains Pfam
profile PF03328: HpcH/HpaI aldolase family
Length = 358
Score = 31.1 bits (67), Expect = 0.92
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = -3
Query: 391 FVEATSTVFRHMLRPDSQQSA*SMRGLNVSNNTDTNHRRSLDDGDSLHDLFLVDF*TGTV 212
F T T R+ P A ++ ++N + T+ + L G++L+ LFL+ F
Sbjct: 46 FSRKTLTPIRYSSSPADHSPATAVEA--ITNRSKTSLKSRLRGGETLYGLFLLSFSPTLA 103
Query: 211 RFSNHVGHTGLITD 170
+ H G+ ++ D
Sbjct: 104 EIAAHAGYDYVVVD 117
>At1g29195.1 68414.m03572 expressed protein
Length = 193
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 158 LTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPP 280
+TA KA HV+++P P S ++++++ A I+ PP
Sbjct: 37 ITASEIMKAHPKHVLKKPSSPTSDHDERDVISATKIVIVPP 77
>At1g77420.1 68414.m09016 hydrolase, alpha/beta fold family protein
similar to monoglyceride lipase from [Homo sapiens]
GI:14594904, [Mus musculus] GI:2632162; contains Pfam
profile PF00561: hydrolase, alpha/beta fold family
Length = 382
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -3
Query: 670 LXKHRIDRDRFLQMFSGPSHFVLDGTT 590
L KH + +D+ L+++ G H +L+G T
Sbjct: 334 LHKHAVSQDKTLKLYPGGYHCILEGDT 360
>At5g11390.1 68418.m01329 expressed protein
Length = 703
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 694 CHQGQRIQRCHFSLAHKEATPLRHTRVLGKLPALELGIL 810
CHQG R+Q SL + E +G + L++G L
Sbjct: 639 CHQGSRLQATFISLTNPEEEETGSKSDIGSVRRLDVGAL 677
>At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 253
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 529 SNEAVKTATKEGSHYGNPT*RWYHRGQSEMGQRTSGETYPCRFC 660
S + K A +EGS G +G E G+ SG+ Y CRFC
Sbjct: 18 SKDGNKQALEEGSSSGQRK----KKGSKE-GKDESGKVYECRFC 56
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,503,422
Number of Sequences: 28952
Number of extensions: 394079
Number of successful extensions: 982
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1882599200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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