Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_M12
         (870 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    31   1.0  
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-...    29   5.3  
At5g23630.1 68418.m02771 ATPase E1-E2 type family protein / halo...    29   5.3  
At1g77240.1 68414.m08996 AMP-binding protein, putative strong si...    29   5.3  
At5g40720.1 68418.m04942 expressed protein contains Pfam profile...    28   7.1  
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi...    28   9.3  
At3g62370.1 68416.m07006 expressed protein                             28   9.3  

>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +3

Query: 474 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIKE 590
           LS  R   W  RAK  L+Q+  TH+  E T+Y+S  ++E
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELRE 318


>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
           GTP-binding protein GUF1 - Saccharomyces cerevisiae,
           PIR:S50374
          Length = 661

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -3

Query: 334 LGTKHRAPDDIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHV 188
           LG +H  P  +I+R P PP  +S   +++++F     E    +CY S V
Sbjct: 231 LGLEHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYVSVV 277


>At5g23630.1 68418.m02771 ATPase E1-E2 type family protein /
           haloacid dehalogenase-like hydrolase familiy protein
           similar to SP|O14072 Cation-transporting ATPase 4 (EC
           3.6.3.-) {Schizosaccharomyces pombe}; contains InterPro
           accession IPR001757: ATPase, E1-E2 type; contains Pfam
           profile PF00702: haloacid dehalogenase-like hydrolase
          Length = 1179

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = -2

Query: 629 IXCGNFSGTSC*KLLYTKGSIG-RAFAVPMRTEHLDQASFCPFAPREVSVLAELALGHLR 453
           I  G  S      LL+T  S+  + F    +   +DQA  C   P + S   E+   H R
Sbjct: 53  IALGGLSAFHILVLLFTTWSVDFKCFVQFSKVNSIDQADACKVTPAKFSGSKEVVPLHFR 112

Query: 452 YSLTD 438
             +TD
Sbjct: 113 SQMTD 117


>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
           similarity to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501
          Length = 545

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -2

Query: 437 VPPQSNSPPGSVLE-PDHAGVLNGDE-RFRHVTTLHAWNET 321
           +P  SNS P +VL   + A  + GD     H TT+H W+ET
Sbjct: 5   LPHASNSCPLTVLGFLERAASVFGDSPSLLHTTTVHTWSET 45


>At5g40720.1 68418.m04942 expressed protein contains Pfam profile
           PF01697: Domain of unknown function
          Length = 583

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 402 PRTGSRGSFKRRRAFPPRHHSARLERNTVRPTILSTAHRFRPTE 271
           PR+G   ++  R A P RH S  +   ++  T+++  H F   E
Sbjct: 412 PRSGVTAAYTCRMALPERHKSI-IRPESLNATLINVVHHFHLKE 454


>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
           like protein A, Arabidopsis thaliana, gb:Q07970
          Length = 790

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 298 DRAPLPPNRVSNETMKVVVFQRRSRET 218
           +RAPLP   V  E +  + F +R +ET
Sbjct: 7   NRAPLPSPNVKKEALSSIPFDKRRKET 33


>At3g62370.1 68416.m07006 expressed protein
          Length = 361

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -2

Query: 422 NSPPGSVL--EPDHAGVLNGDERFRHVTTLHAWN 327
           N+ PG +    P   G  NG +RF H+  ++AWN
Sbjct: 160 NAIPGRLYGGNPIDNGEGNGGDRFGHLVDIYAWN 193


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,150,730
Number of Sequences: 28952
Number of extensions: 370254
Number of successful extensions: 850
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2038669600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)