Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_M11
(883 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 258 6e-69
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 254 5e-68
06_03_0046 - 15852653-15854560 33 0.23
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 6.5
09_06_0103 + 20873310-20873382,20873530-20873735 29 6.5
03_05_0136 + 21158917-21159939,21160183-21160241,21160259-211602... 29 6.5
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 29 6.5
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 28 8.6
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 8.6
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 28 8.6
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 258 bits (631), Expect = 6e-69
Identities = 119/199 (59%), Positives = 149/199 (74%)
Frame = +1
Query: 79 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 258
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 259 KLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 438
KL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 439 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 618
EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++W
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFW 180
Query: 619 LLAREVLRLRGVLPRDQRW 675
LLAR VL++RG + +W
Sbjct: 181 LLARMVLQMRGTILPGHKW 199
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 254 bits (623), Expect = 5e-68
Identities = 116/188 (61%), Positives = 143/188 (76%)
Frame = +1
Query: 112 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 291
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 292 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 471
IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131
Query: 472 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 651
DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL++RG
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRG 191
Query: 652 VLPRDQRW 675
+ +W
Sbjct: 192 TILPGHKW 199
>06_03_0046 - 15852653-15854560
Length = 635
Score = 33.5 bits (73), Expect = 0.23
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Frame = -2
Query: 783 RSNYXWLAVPQPVPWLVVHPSLSSGSR*KNQIN-HNIPALVTGKHTTKPQHFTCQ-QPPH 610
R+N W A P + V+P + S R Q N N P+L PQ F Q Q H
Sbjct: 281 RNNLVWRAKSSPAKKMAVYPRIPSSPRNTVQSNPQNFPSLAMANLNPNPQRFLRQGQVVH 340
Query: 609 QTN--RVGRLGVAWDSNVHKS*WGVCVA 532
Q RV R+ + + + C+A
Sbjct: 341 QGGNLRVPRVDLTIPQRLPRRHEDACIA 368
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 179 TFSAPRWVVAASILVTSSSLRASTSNP 99
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +3
Query: 357 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 464
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>03_05_0136 +
21158917-21159939,21160183-21160241,21160259-21160294,
21160345-21160387,21160582-21160698,21162090-21162179,
21162329-21162436,21162547-21162588
Length = 505
Score = 28.7 bits (61), Expect = 6.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 799 MKHWSQWVHGLKYRPAXWTRWXSW 870
+K W+ WVHGL Y+ SW
Sbjct: 371 IKWWNSWVHGLGYQSCKMRGLESW 394
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = -2
Query: 699 KNQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 592
K Q NIP LVT TTK + F PPH +G
Sbjct: 465 KPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -1
Query: 361 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 206
+ SV + D+ ++ RT RGS L QPE + PRY+ H VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 186 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 293
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 28.3 bits (60), Expect = 8.6
Identities = 22/78 (28%), Positives = 27/78 (34%)
Frame = +3
Query: 132 CHQNACCNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*C 311
CH C P GR+ P G + CD A+ G TC C H+ P C
Sbjct: 324 CHAGKCGGCPLQGRRT-CPCGKKDYPSL----DCDAEAATCGSTCEKVLGCGRHKCPERC 378
Query: 312 VRHLITALRSACCTEVCR 365
R T+ CR
Sbjct: 379 HRGSCVETCRLVITKSCR 396
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,904,916
Number of Sequences: 37544
Number of extensions: 654380
Number of successful extensions: 1729
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1729
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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