Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_M11
         (883 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   0.70 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   0.70 
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    25   1.2  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    25   1.2  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    25   1.2  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    25   1.2  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    24   2.1  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    24   2.1  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    24   2.1  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    24   2.1  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    24   2.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.8  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    22   6.5  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    22   6.5  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    22   6.5  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    22   6.5  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    22   6.5  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    22   6.5  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   8.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   8.6  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 683 TTSQRWSRGSTPRSLNTSRANNHHIKP 603
           T +Q WSRG+T  SL+ S  +   + P
Sbjct: 18  TQAQHWSRGNTWLSLDNSNMSMSSVGP 44


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 683 TTSQRWSRGSTPRSLNTSRANNHHIKP 603
           T +Q WSRG+T  SL+ S  +   + P
Sbjct: 18  TQAQHWSRGNTWLSLDNSNMSMSSVGP 44


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -2

Query: 828 PMNPLAPVFHSSFMDRSNYXWLAVPQPVP 742
           P+    PV++ +F  RS   W+++ + +P
Sbjct: 114 PVPVPVPVYYGNFPPRSMGPWISIQEQIP 142


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -2

Query: 828 PMNPLAPVFHSSFMDRSNYXWLAVPQPVP 742
           P+    PV++ +F  RS   W+++ + +P
Sbjct: 114 PVPVPVPVYYGNFPPRSMGPWISIQEQIP 142


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -2

Query: 828 PMNPLAPVFHSSFMDRSNYXWLAVPQPVP 742
           P+    PV++ +F  RS   W+++ + +P
Sbjct: 114 PVPVPVPVYYGNFPPRSMGPWISIQEQIP 142


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -2

Query: 828 PMNPLAPVFHSSFMDRSNYXWLAVPQPVP 742
           P+    PV++ +F  RS   W+++ + +P
Sbjct: 347 PVPVPVPVYYGNFPPRSMGPWISIQEQIP 375


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 6/23 (26%), Positives = 15/23 (65%)
 Frame = -2

Query: 810 PVFHSSFMDRSNYXWLAVPQPVP 742
           PV++ +F+ R    W+++ + +P
Sbjct: 120 PVYYGNFLPRPMGPWISIQEQIP 142


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 6/23 (26%), Positives = 15/23 (65%)
 Frame = -2

Query: 810 PVFHSSFMDRSNYXWLAVPQPVP 742
           PV++ +F+ R    W+++ + +P
Sbjct: 123 PVYYGNFLPRPMGPWISIQEQIP 145


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 6/23 (26%), Positives = 15/23 (65%)
 Frame = -2

Query: 810 PVFHSSFMDRSNYXWLAVPQPVP 742
           PV++ +F+ R    W+++ + +P
Sbjct: 123 PVYYGNFLPRPMGPWISIQEQIP 145


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 6/23 (26%), Positives = 15/23 (65%)
 Frame = -2

Query: 810 PVFHSSFMDRSNYXWLAVPQPVP 742
           PV++ +F+ R    W+++ + +P
Sbjct: 123 PVYYGNFLPRPMGPWISIQEQIP 145


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 6/23 (26%), Positives = 15/23 (65%)
 Frame = -2

Query: 810 PVFHSSFMDRSNYXWLAVPQPVP 742
           PV++ +F+ R    W+++ + +P
Sbjct: 123 PVYYGNFLPRPMGPWISIQEQIP 145


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 685 PQHPSAGHGEAHHEASTLH 629
           P H + GHG +H  A+  H
Sbjct: 414 PHHHTMGHGHSHIHATPHH 432


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 6/23 (26%), Positives = 14/23 (60%)
 Frame = -2

Query: 810 PVFHSSFMDRSNYXWLAVPQPVP 742
           PV++ +F  R    W+++ + +P
Sbjct: 117 PVYYGNFPPRPMGSWISIQEQIP 139


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 6/23 (26%), Positives = 14/23 (60%)
 Frame = -2

Query: 810 PVFHSSFMDRSNYXWLAVPQPVP 742
           PV++ +F  R    W+++ + +P
Sbjct: 117 PVYYGNFPPRPMGSWISIQEQIP 139


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 6/23 (26%), Positives = 14/23 (60%)
 Frame = -2

Query: 810 PVFHSSFMDRSNYXWLAVPQPVP 742
           PV++ +F  R    W+++ + +P
Sbjct: 117 PVYYGNFPPRPMGSWISIQEQIP 139


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 6/23 (26%), Positives = 14/23 (60%)
 Frame = -2

Query: 810 PVFHSSFMDRSNYXWLAVPQPVP 742
           PV++ +F  R    W+++ + +P
Sbjct: 117 PVYYGNFPPRPMGSWISIQEQIP 139


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 6/23 (26%), Positives = 14/23 (60%)
 Frame = -2

Query: 810 PVFHSSFMDRSNYXWLAVPQPVP 742
           PV++ +F  R    W+++ + +P
Sbjct: 117 PVYYGNFPPRPMGSWISIQEQIP 139


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 6/23 (26%), Positives = 14/23 (60%)
 Frame = -2

Query: 810 PVFHSSFMDRSNYXWLAVPQPVP 742
           PV++ +F  R    W+++ + +P
Sbjct: 117 PVYYGNFPPRPMGSWISIQEQIP 139


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/29 (24%), Positives = 16/29 (55%)
 Frame = -2

Query: 828 PMNPLAPVFHSSFMDRSNYXWLAVPQPVP 742
           P+    P++  +F  RS   W+++ + +P
Sbjct: 362 PVPVPVPIYCGNFPPRSMEPWISMQEQIP 390


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 6/30 (20%), Positives = 16/30 (53%)
 Frame = +1

Query: 460 VLDPAQDHQPITEASYVNIPVIALCNTDSP 549
           ++DP ++++   E   + IP++   +   P
Sbjct: 167 IVDPVEENETYDEFDTIRIPIVRSLSKSPP 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 273,404
Number of Sequences: 438
Number of extensions: 6424
Number of successful extensions: 37
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)