Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_M11
(883 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 256 1e-68
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 249 2e-66
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 249 2e-66
At2g22340.1 68415.m02651 hypothetical protein 33 0.33
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP... 32 0.44
At2g07020.1 68415.m00803 protein kinase family protein contains ... 30 2.4
At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein ... 29 5.4
At2g34150.1 68415.m04180 expressed protein 29 5.4
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha... 28 7.2
>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
to laminin receptor-like protein GB:U01955 [Arabidopsis
thaliana]; identical to cDNA laminin receptor homologue
GI:16379
Length = 298
Score = 256 bits (628), Expect = 1e-68
Identities = 116/188 (61%), Positives = 142/188 (75%)
Frame = +1
Query: 112 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 291
L+ E DV M AA HLG +N N+QME YV+KRR DG ++ NL +TWEKL +AAR +VA
Sbjct: 12 LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71
Query: 292 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 471
IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDP 131
Query: 472 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 651
DHQPI E + NIP+IA C+TDSP+RFVDI IP N K HSIG ++WLLAR VL++RG
Sbjct: 132 RTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 191
Query: 652 VLPRDQRW 675
+ Q+W
Sbjct: 192 TIAAGQKW 199
>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 280
Score = 249 bits (610), Expect = 2e-66
Identities = 112/184 (60%), Positives = 139/184 (75%)
Frame = +1
Query: 124 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 303
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Query: 304 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 483
D+ V S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP DH
Sbjct: 77 KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136
Query: 484 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPR 663
QPI E + NIP IA C+TDSP+ FVDI IP N K HSIG ++WLLAR VL++RG +
Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILA 196
Query: 664 DQRW 675
Q+W
Sbjct: 197 AQKW 200
>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 332
Score = 249 bits (610), Expect = 2e-66
Identities = 112/184 (60%), Positives = 139/184 (75%)
Frame = +1
Query: 124 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 303
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Query: 304 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 483
D+ V S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP DH
Sbjct: 77 KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136
Query: 484 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPR 663
QPI E + NIP IA C+TDSP+ FVDI IP N K HSIG ++WLLAR VL++RG +
Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILA 196
Query: 664 DQRW 675
Q+W
Sbjct: 197 AQKW 200
>At2g22340.1 68415.m02651 hypothetical protein
Length = 358
Score = 32.7 bits (71), Expect = 0.33
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 162 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 281
SW LP+GD +Q C WY + S +G+ + C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227
>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
identical to SP|Q9GCB9 Mitochondrial ribosomal protein
S2 {Arabidopsis thaliana}; contains Pfam profile
PF00318: ribosomal protein S2
Length = 219
Score = 32.3 bits (70), Expect = 0.44
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 445 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 594
P ++V D + I EAS + IPV+A+ + + PL F + I P + S
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181
>At2g07020.1 68415.m00803 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 700
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 400 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 501
TP TNQ++ A E +LDP PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653
>At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 716
Score = 28.7 bits (61), Expect = 5.4
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = -2
Query: 861 PXGPXGGAVFQPMNPLAPVFHSSFMDRSNYXWLAVPQP-VPWLVVHPSLSSGSR*KNQIN 685
P P G +V M+PL+P + M SN W PQP VP L + S SR ++ +N
Sbjct: 390 PGSPSGVSV---MSPLSPSAAGNGMSHSNMAW---PQPNVPALHLPGSNLQSSRLRSSLN 443
Query: 684 -HNIP 673
+IP
Sbjct: 444 ARDIP 448
>At2g34150.1 68415.m04180 expressed protein
Length = 700
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -2
Query: 573 DSNVHKS*WGVCVAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTW 403
D +H+ W S + FSN L + +Q +QE+ E S D S TW
Sbjct: 308 DELIHQDPWAASEISSGTHSYSN-GFSNPLYDISGIQEHQESEEVESSCDTESIKTW 363
>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
from [Arabidopsis thaliana]
Length = 78
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 228 PCDQLASYLGKTCSGCSCCRSHREPR*CVRHLITALRSACC 350
P Q Y GK + + + R V HL+ ALR CC
Sbjct: 38 PVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGGCC 78
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,489,676
Number of Sequences: 28952
Number of extensions: 488697
Number of successful extensions: 1201
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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