Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_M06
(869 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0031 + 9933279-9933282,9933288-9933728,9934029-9934657 29 3.7
03_02_0341 - 7643426-7643973,7644340-7644505 29 3.7
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 29 3.7
11_06_0610 - 25449085-25453284 29 4.8
09_04_0506 - 18188785-18190599 29 4.8
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 4.8
04_01_0041 - 464695-464850,467485-469029 29 6.4
01_05_0227 - 19512866-19514983 29 6.4
09_06_0184 - 21413275-21414267 28 8.5
>04_03_0031 + 9933279-9933282,9933288-9933728,9934029-9934657
Length = 357
Score = 29.5 bits (63), Expect = 3.7
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 101 PQTDNPSARSMDMQPLPSS 157
P+TD PS +D++PLPSS
Sbjct: 211 PKTDQPSRAPIDLKPLPSS 229
>03_02_0341 - 7643426-7643973,7644340-7644505
Length = 237
Score = 29.5 bits (63), Expect = 3.7
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Frame = +2
Query: 455 HS*RSQCAGHPFILSHYYWRSRPYASSHPP-LRSRLHQPDHQIPEFHTP--TTPDLTSIS 625
H ++CA F+ ++ + + HPP + H DH +P H P T PD
Sbjct: 145 HRPSAECAS-AFLCDPFH-KHHHHIVLHPPVIVPPKHDHDHSLPPVHEPPVTVPDHKPAP 202
Query: 626 INPPDAXLXGXRAGVKXPP 682
+ PD V PP
Sbjct: 203 VTVPDHKPPSTTTPVYAPP 221
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 29.5 bits (63), Expect = 3.7
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +3
Query: 285 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWTTADVT 458
TE +N V V L SS GY D + ++ V + K+ V +D TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224
Query: 459 VEGVNVLATPSSSRITIGGLALMHQ 533
+ +N+L P G L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.1 bits (62), Expect = 4.8
Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Frame = +2
Query: 521 PYASSHPPLRSRLHQPDHQIPEFHTP----TTPDLTSISINPPDAXLXGXRAGVKXPPXV 688
P S PP +S P P +P + P +S+ PP A V PP V
Sbjct: 1237 PVISPPPPEKS----PPPAAPVILSPPAVKSLPPPAPVSLPPPPVKSLPPPAPVSLPPPV 1292
Query: 689 IRGLPSXG-XSXPPP 730
++ LP S PPP
Sbjct: 1293 VKSLPPPAPVSLPPP 1307
>09_04_0506 - 18188785-18190599
Length = 604
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +3
Query: 567 PIIKSPNSIHQPPQT*HPFPSIPLTPXXKXFXPG 668
P+ PN +H PPQ P + P P PG
Sbjct: 120 PVPDRPNPVHLPPQPQPPVAAAPPPPPHNQIQPG 153
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.1 bits (62), Expect = 4.8
Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Frame = +2
Query: 494 LSHYYWRSRPYASSHPPLRSRLHQPDHQIPEFHTPTTPDLTSISINPP--DAXLXGXRAG 667
LSH W+ P+ HPP R H ++ +P +P PP + G + G
Sbjct: 1033 LSHLEWKRCPH---HPP--ERPHYLPGEVGGAPSPPSPP-------PPQRENTSVGIQGG 1080
Query: 668 VKX-PPXVIRGLPSXGXSXPPPFXGAWAKXGFGPP 769
+ PP + L G + PPP GA A PP
Sbjct: 1081 IPPLPPPLPPTLGDYGVAPPPPSIGAGAPPPPPPP 1115
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 246 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 422
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 423 TVD 431
+D
Sbjct: 100 PLD 102
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 463 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 371
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>09_06_0184 - 21413275-21414267
Length = 330
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 41 SFLPLRPFP-SLVNAFSSSKPPQTDNPSARSMDMQPLPSSDS 163
SFLP P S+ + F S +PP T + S P PS+ S
Sbjct: 77 SFLPAPALPTSMESTFPSPRPPSTPSSSTPPSSPVPPPSARS 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,149,548
Number of Sequences: 37544
Number of extensions: 500767
Number of successful extensions: 1519
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1518
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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