Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_M06
         (869 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.40 
SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)                    32   0.70 
SB_56047| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)                     30   2.1  
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)              30   2.1  
SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)               29   3.7  
SB_30122| Best HMM Match : YadA (HMM E-Value=2)                        29   4.9  
SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)                 29   4.9  
SB_53705| Best HMM Match : Cornifin (HMM E-Value=1.3)                  29   4.9  
SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.9  
SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086)                   28   8.6  
SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)                28   8.6  

>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2851

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 41   SFLPLRPFPSLVNAFSSSKPPQTDNPSARSMDMQPL 148
            + +P+RP P  V+ FS S P  T N S R + M P+
Sbjct: 2371 NMVPVRPSPPHVDGFSQSPPMSTLNMSNRPVSMSPV 2406


>SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)
          Length = 458

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +2

Query: 416 TSHS*PLLDYC*RHS*RSQCAGHPFILSHYYWRSRPY--ASSHPPLR 550
           T +   LL YC     R   AGHPF+L  Y +  R Y   +S  PLR
Sbjct: 91  TKYDIDLLGYCTEQEIRRVVAGHPFLLDGYKFDLRVYVLVTSCDPLR 137


>SB_56047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 440

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 18/55 (32%), Positives = 22/55 (40%)
 Frame = +2

Query: 575 QIPEFHTPTTPDLTSISINPPDAXLXGXRAGVKXPPXVIRGLPSXGXSXPPPFXG 739
           Q P    P  P LT   + PP     G  A    PP +  G+P+     PPP  G
Sbjct: 274 QRPTSQPPPPPPLTGGMLPPP---FGGHPAAAPPPPPLPAGVPAPPPPPPPPMLG 325


>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
          Length = 480

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 21/77 (27%), Positives = 28/77 (36%)
 Frame = +2

Query: 539 PPLRSRLHQPDHQIPEFHTPTTPDLTSISINPPDAXLXGXRAGVKXPPXVIRGLPSXGXS 718
           PP R +   P   +     P  P    + + PP       R  +  PP  I   P+   S
Sbjct: 301 PPSRDQAPAPPPPLNATPPPPPPSRDQVPLPPPPL-----RGQIAPPPPPISKPPTSTRS 355

Query: 719 XPPPFXGAWAKXGFGPP 769
            PPP  G   +   GPP
Sbjct: 356 APPPPPGRAPQPLGGPP 372


>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
          Length = 392

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 21/77 (27%), Positives = 28/77 (36%)
 Frame = +2

Query: 539 PPLRSRLHQPDHQIPEFHTPTTPDLTSISINPPDAXLXGXRAGVKXPPXVIRGLPSXGXS 718
           PP R +   P   +     P  P    + + PP       R  +  PP  I   P+   S
Sbjct: 213 PPSRDQAPAPPPPLNATPPPPPPSRDQVPLPPPPL-----RGQIAPPPPPISKPPTSTRS 267

Query: 719 XPPPFXGAWAKXGFGPP 769
            PPP  G   +   GPP
Sbjct: 268 APPPPPGRAPQPLGGPP 284


>SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)
          Length = 474

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -1

Query: 458 CDVSSSPTKVNCDWYFEARGGRKNDSLKIDKIRVAVAFYDGGDVR**LHSDTVRFGFGAS 279
           C  +  P   +  W+F +  G K DS  +  +  +     G  V   +HS  VR G GA+
Sbjct: 275 CVRAHLPNAADQPWFFLSNTGAKIDSNNVQSLLRSFQRSTGVQVSKPIHSTAVRCGSGAT 334

Query: 278 KIE 270
           + E
Sbjct: 335 EEE 337


>SB_30122| Best HMM Match : YadA (HMM E-Value=2)
          Length = 408

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 396 SAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRIT 506
           S P  K+P+T     T+A+VT    +++ +PS + +T
Sbjct: 239 SRPETKVPITTIGASTSAEVTTSQRDLMPSPSQAHVT 275


>SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1433

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
 Frame = +3

Query: 270 FDLTGTETKSNSVTVQS---LPNVSSIIKGYRDAYLVNL 377
           F +TG E KS+S+T++    +P V ++ +G  D +LV+L
Sbjct: 485 FTITGQEGKSDSITIRHADVIPRV-ALARGNEDVFLVHL 522


>SB_53705| Best HMM Match : Cornifin (HMM E-Value=1.3)
          Length = 308

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
 Frame = +2

Query: 521 PYASSHPPLRSRLHQPDHQ---IPEFHTPTTPDLTSISINPPDAXLXGXRAGVKXPPXVI 691
           PYAS   PL + +  P +    +P + +   P   S+ + P  + L    A +  PP   
Sbjct: 126 PYASMLVPLYASILVPPYASTLVPPYASMLVPTYASMLVPPYASMLVSPYASILVPPYAS 185

Query: 692 RGLPSXGXSXPPPF 733
             +P+      PP+
Sbjct: 186 TLVPTYASILVPPY 199


>SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 551  SRLHQPDHQIPEFHTPTTPDLTSISINPPDAXLXGXRAGVKXPP 682
            SRLH P   +P  H  +T  L S+ + PP   L G  A +  PP
Sbjct: 906  SRLHPP---LPSIHG-STDSLDSLPLPPPPPELLGSDADLPPPP 945


>SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086)
          Length = 627

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 555 GYINPIIKSPNSIHQPPQT*HPFPSIPLTPXXKXFXPGLK 674
           G  +P I  P   H PPQT  P P  PL P  +   P L+
Sbjct: 146 GLAHPSITQPPPRHSPPQTPVP-PPPPLPPFAQVSLPPLE 184


>SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)
          Length = 1671

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = +3

Query: 501 ITIGGLALMHQATLPCDLGYINPIIKS-PNSIHQPPQT*HPFPSIPLTPXXKXFXPGLKX 677
           I IG +   H       +G + P ++  P S   PP   HP    PL+   + + P    
Sbjct: 242 IVIGAIQTAHGMLRKKHVGLLGPKLQGVPASCSIPPSCAHPRLRKPLSTLTQHWRPARDL 301

Query: 678 LRLSSEGS 701
           L +  +GS
Sbjct: 302 LAIMGQGS 309


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,659,699
Number of Sequences: 59808
Number of extensions: 489722
Number of successful extensions: 1597
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1590
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2491217872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)