Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_M05
(885 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 34 0.17
07_03_1747 + 29188568-29188715,29188793-29189541 31 1.6
10_02_0195 + 6578384-6578629,6578710-6579300,6586302-6587512,658... 30 2.8
12_01_0524 - 4167867-4168445 29 3.8
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 29 6.6
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 28 8.7
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741... 28 8.7
04_01_0530 - 6928528-6929500,6929514-6930964 28 8.7
01_06_1147 + 34892415-34893702,34894051-34894676 28 8.7
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 33.9 bits (74), Expect = 0.17
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 309 HQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 145
H P AAA P VP++ P L + S GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 362 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 514
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>10_02_0195 +
6578384-6578629,6578710-6579300,6586302-6587512,
6587593-6587844,6587932-6588042,6588133-6588214,
6588299-6588382,6588464-6588658
Length = 923
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = -2
Query: 737 PGXPXXNXGTARQARXPGGXXPERTXGTXPRELPPRPRSWXCTALDRAVTSHAPDSN 567
PG P R P + T PR+ P P+S+ LD V PD++
Sbjct: 469 PGSPLPQISPVRGPSPPPQQVAPNSPTTLPRQPSPAPQSYLVPPLDEHVPPPQPDTS 525
>12_01_0524 - 4167867-4168445
Length = 192
Score = 29.5 bits (63), Expect = 3.8
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -1
Query: 306 QPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 127
QPS+AA P + + + + YSH G + S + G + G GGG P V
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160
Query: 126 CEERVDHEGQ*C 91
EE + E + C
Sbjct: 161 VEEVEEEEEKEC 172
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 207 VRVHRANTGRSSNELDRQTTELERRGVGLQHLAGVLGTL 323
V+ H R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 213 VHRANTGRSSNELDRQTTELERRGVG 290
V+ A +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396
>07_03_1709 -
28873172-28873327,28873519-28873584,28874067-28874127,
28875406-28875462,28876301-28876531,28876685-28876799,
28876897-28877136,28877222-28877316,28877406-28877585,
28877663-28877839,28877920-28878890
Length = 782
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -1
Query: 396 YTGAESVVPGGGCSRV*QYHVGPPQAFRGHQPSAAAPLPCVPTQSFVDPIHLKICLY 226
+ G E PGGG + Y++G GH+ SA+ C+ D + K CLY
Sbjct: 184 FDGGECRSPGGGDGGLFSYNLGWANGGPGHRRSASVSELCL---GGADGLGWKPCLY 237
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 42 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 182
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
>01_06_1147 + 34892415-34893702,34894051-34894676
Length = 637
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +2
Query: 311 PRNACGGPTWYC*TRLQPPPGTTLSAPVYLITAPSPG 421
P N+ G + C LQP PGT S P T+PSPG
Sbjct: 210 PANSFLGNAFLCGFPLQPCPGTAPS-PSPSPTSPSPG 245
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,382,975
Number of Sequences: 37544
Number of extensions: 541149
Number of successful extensions: 1707
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1705
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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