Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_M05
         (885 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica...    31   1.3  
At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family pr...    28   9.5  
At3g55220.1 68416.m06133 splicing factor, putative contains CPSF...    28   9.5  
At3g55200.1 68416.m06131 splicing factor, putative contains CPSF...    28   9.5  
At3g24540.1 68416.m03082 protein kinase family protein contains ...    28   9.5  

>At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to transcription
           factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 862

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/58 (22%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -2

Query: 188 LKCRVRLTTILESGGESRSYVARSESIM-RDSDVAFSHSAALAIAQVRRNGNKNNISR 18
           + C++ +   LE+    +S ++R   ++  +SD +F  S A+ + +   NG+K ++ +
Sbjct: 126 IPCQIHVFAKLEASSTVKSTISRGGLVLISESDTSFGLSEAVVVKEQMGNGDKRSVDK 183


>At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family
           protein similar to A. thaliana putative protein
           F6I18.110, GenBank accession number 2980768
          Length = 310

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -1

Query: 213 LGLTNVSMSQMQGQVDYDFGVGGGVPIVRCEERVDHEG 100
           LGL N S S   G    D G+GGG P +  +     EG
Sbjct: 24  LGLPNFSASSAAGLSGVDGGLGGGAPPMMLQLGSGEEG 61


>At3g55220.1 68416.m06133 splicing factor, putative contains CPSF A
           subunit region (PF03178); contains weak WD-40 repeat
           (PF00400); similar to Splicing factor 3B subunit 3
           (SF3b130)/spliceosomal protein/Splicing factor 3B
           subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
           EMBL:HSAJ1443_1
          Length = 1214

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 391 GRGERSPRRWLQPRLAVPRRASTSVPRTPA 302
           GRG RS  R L+P LA+   A + +P  P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455


>At3g55200.1 68416.m06131 splicing factor, putative contains CPSF A
           subunit region (PF03178); contains weak WD-40 repeat
           (PF00400); similar to Splicing factor 3B subunit 3
           (SF3b130)/spliceosomal protein/Splicing factor 3B
           subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
           EMBL:HSAJ1443_1
          Length = 1214

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 391 GRGERSPRRWLQPRLAVPRRASTSVPRTPA 302
           GRG RS  R L+P LA+   A + +P  P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455


>At3g24540.1 68416.m03082 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 509

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 120 PRNVRSGLPPRLQNRSQPDPA 182
           PR+  +  PPRL NR+ P PA
Sbjct: 75  PRSPSTSTPPRLGNRNPPPPA 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,022,197
Number of Sequences: 28952
Number of extensions: 360503
Number of successful extensions: 1041
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)