Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_M04
         (858 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    25   1.0  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    25   1.0  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     24   1.3  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 644 KWXSSLGWLVYGIGDXMI 591
           KW S L W  YG G  MI
Sbjct: 586 KWLSFLSWFRYGNGALMI 603


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 644 KWXSSLGWLVYGIGDXMI 591
           KW S L W  YG G  MI
Sbjct: 586 KWLSFLSWFRYGNGALMI 603


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +1

Query: 181 VSHPHSDGSSDPTRXLTXXXXXXVRSSXADTGTIYLXXA 297
           +SH H+DG + P   L            AD  T+++  A
Sbjct: 232 MSHIHNDGDNKPDTILVNGFGRFKHFVGADNSTVFVPTA 270


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,790
Number of Sequences: 336
Number of extensions: 949
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23763101
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)