Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_M03
(891 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 55 7e-10
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 54 2e-09
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 53 3e-09
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 51 1e-08
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 51 1e-08
AF025669-1|AAB81523.1| 243|Tribolium castaneum GABA receptor su... 44 1e-06
AJ606487-1|CAE55183.1| 203|Tribolium castaneum Giant protein pr... 25 0.80
U63132-1|AAB38392.1| 372|Tribolium castaneum decapentaplegic pr... 22 7.4
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 55.2 bits (127), Expect = 7e-10
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
Frame = +3
Query: 174 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSS 350
ES P ++ LTL + ++ E + A L + W D L WN E+G L ++
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82
Query: 351 ERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPXSMQLDNXPNDMQTC 527
+LW+PDV++ N+A G + V +NGS ++ + M + P D Q C
Sbjct: 83 NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIFKSTCKMDITWFPFDDQHC 142
Query: 528 TFKFGS 545
KFGS
Sbjct: 143 DMKFGS 148
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 53.6 bits (123), Expect = 2e-09
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Frame = +3
Query: 174 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 350
ES P ++ LTL + ++ E + A L + W D L WN E+ G ++
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82
Query: 351 ERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPXSMQLDNXPNDMQTC 527
+LW+PDV++ N+A G + V +NGS ++ + + + P D Q C
Sbjct: 83 NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIFKSTCKIDITWFPFDDQHC 142
Query: 528 TFKFGS 545
KFGS
Sbjct: 143 DMKFGS 148
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 52.8 bits (121), Expect = 3e-09
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 2/126 (1%)
Frame = +3
Query: 174 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 350
ES P ++ LTL + ++ E + A L + W D L WN E+ G ++
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82
Query: 351 ERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPXSMQLDNXPNDMQTC 527
+LW+PDV++ N+A G + V + GS ++ + M + P D Q C
Sbjct: 83 NKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGSCLYVPPGIFKSTCKMDITWFPFDDQHC 142
Query: 528 TFKFGS 545
KFGS
Sbjct: 143 DMKFGS 148
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 51.2 bits (117), Expect = 1e-08
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 446
L + W D L WN E+G L ++ +LW+PDV++ N+A G + V + GS
Sbjct: 56 LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115
Query: 447 VSWIKRLDISTPXSMQLDNXPNDMQTCTFKFGS 545
++ + M + P D Q C KFGS
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGS 148
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 51.2 bits (117), Expect = 1e-08
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 446
L + W D L WN E+G L ++ +LW+PDV++ N+A G + V + GS
Sbjct: 56 LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115
Query: 447 VSWIKRLDISTPXSMQLDNXPNDMQTCTFKFGS 545
++ + M + P D Q C KFGS
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGS 148
>AF025669-1|AAB81523.1| 243|Tribolium castaneum GABA receptor
subunit protein.
Length = 243
Score = 44.4 bits (100), Expect = 1e-06
Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 13/152 (8%)
Frame = +3
Query: 129 SLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNWIDK 296
++S ++DS +YD+ P+ + V +T++ L +++ E + + + W D
Sbjct: 40 NISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDP 99
Query: 297 RLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSNNGSV 449
RL++ G T V SE +W PD +N ATT+ ++ RV ++GS+
Sbjct: 100 RLAYGKRP-GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RVHHSGSI 155
Query: 450 SWIKRLDISTPXSMQLDNXPNDMQTCTFKFGS 545
+ RL I+ M L P D Q C + S
Sbjct: 156 TRSIRLTITASCPMNLQYLPMDRQLCHIEIES 187
>AJ606487-1|CAE55183.1| 203|Tribolium castaneum Giant protein
protein.
Length = 203
Score = 25.0 bits (52), Expect = 0.80
Identities = 19/73 (26%), Positives = 29/73 (39%)
Frame = -3
Query: 253 VDSDSRMLACLKCRVRLTTILESGGDSRSYVARSESIMRDSDVAFSHSAALAIAQVRRNG 74
V S+S CR I + ++ V+ + +DS AF+ +AQV
Sbjct: 56 VSSNSYTPKIKSCRPFKAYIKDPLTLAQGLVSTEMLLKKDSSEAFNEFRTKILAQVHGTN 115
Query: 73 NKNNISRRHFMTT 35
N N + R TT
Sbjct: 116 NGTNKNMRRLSTT 128
>U63132-1|AAB38392.1| 372|Tribolium castaneum decapentaplegic
protein protein.
Length = 372
Score = 21.8 bits (44), Expect = 7.4
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -2
Query: 461 LYPG-DGAVIRYTGAESVVPGGGC 393
LY G DG+VI E VV G GC
Sbjct: 348 LYLGSDGSVILKNYKEMVVVGCGC 371
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,509
Number of Sequences: 336
Number of extensions: 3048
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24720487
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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