Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_M03
(891 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41) 62 6e-10
SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 61 1e-09
SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 60 2e-09
SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 1e-08
SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 56 5e-08
SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 2e-07
SB_37593| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 53 4e-07
SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 3e-06
SB_54107| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.4e-35) 49 4e-06
SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 49 4e-06
SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24) 49 6e-06
SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 47 2e-05
SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 5e-05
SB_7484| Best HMM Match : Neur_chan_memb (HMM E-Value=1.3e-10) 45 1e-04
SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 44 1e-04
SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24) 44 2e-04
SB_38490| Best HMM Match : Neur_chan_LBD (HMM E-Value=2e-24) 43 3e-04
SB_27375| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.3e-07) 43 4e-04
SB_46592| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_18568| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.5e-22) 41 0.001
SB_38726| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_53336| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.022) 40 0.002
SB_4545| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.006
SB_37177| Best HMM Match : Neur_chan_LBD (HMM E-Value=5.3) 38 0.011
SB_453| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.1e-08) 38 0.011
SB_43224| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.002) 38 0.014
SB_30805| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.9e-06) 37 0.019
SB_13360| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 36 0.044
SB_30974| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.9e-07) 34 0.18
SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 0.67
SB_37942| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.7e-05) 32 0.72
SB_42075| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.95
SB_46603| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.95
SB_55106| Best HMM Match : Neur_chan_memb (HMM E-Value=4.5e-11) 31 1.3
SB_4972| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.92) 31 1.3
SB_27095| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_14827| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8) 30 2.2
SB_41593| Best HMM Match : Neur_chan_memb (HMM E-Value=2.1e-08) 30 2.9
SB_37285| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_32914| Best HMM Match : Neur_chan_memb (HMM E-Value=2.1e-08) 30 2.9
SB_19927| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.9e-07) 30 2.9
SB_53420| Best HMM Match : Hist_deacetyl (HMM E-Value=0) 29 5.1
SB_24860| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_14966| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00043) 29 5.1
SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08) 29 5.1
SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_17868| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.7e-36) 29 6.7
SB_15521| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.1e-15) 29 6.7
SB_37132| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-06) 29 6.7
>SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41)
Length = 342
Score = 62.1 bits (144), Expect = 6e-10
Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 3/116 (2%)
Frame = +3
Query: 207 LTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLL 383
LTL+ H ++E ++ L+ W D RL+WN E+G + S+ +W PD+ +L
Sbjct: 22 LTLYDFHTQDEKNE-VIQTFLILEQMWNDTRLAWNETEYGGIKQMTLRSKLIWTPDISVL 80
Query: 384 NAAATTAG--DYALRARVSNNGSVSWIKRLDISTPXSMQLDNXPNDMQTCTFKFGS 545
N+A + +R +++ G V W+ L + T M + + P D Q C +FGS
Sbjct: 81 NSANKDMDLREKNIRLFINSAGEVLWMNPLILHTSCGMDIAHFPFDNQACELRFGS 136
>SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 541
Score = 60.9 bits (141), Expect = 1e-09
Identities = 38/150 (25%), Positives = 73/150 (48%), Gaps = 12/150 (8%)
Frame = +3
Query: 141 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 305
++ LL Y +++ P + + + L + LR ++ E + + I ++ W D L
Sbjct: 35 LLKYLLQNYSKDARPVLNVNDPVQLKLGIMLRQVIDLNERDQILTINVWIRQYWKDHLLK 94
Query: 306 WNAGEWG-CSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNN------GSVSWIKR 464
WN ++G + ++ +R+W+PDV+L N A+T +L ++ N GS +W+
Sbjct: 95 WNPDDFGGIKSINIAPDRVWKPDVLLYNRASTDLRFGSLNNKIDTNVIVNHDGSTTWLAP 154
Query: 465 LDISTPXSMQLDNXPNDMQTCTFKFGSRMH 554
I + + + P D+Q+C FGS H
Sbjct: 155 AIIKSECKIDVRFFPFDVQSCELTFGSWTH 184
Score = 41.1 bits (92), Expect = 0.001
Identities = 21/88 (23%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Frame = +3
Query: 141 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 305
+++ L Y +++ P D + + L + LR ++ E E + ++ W D L
Sbjct: 453 LLNYLFQNYSKDARPVLNVDDPVQLKLGIMLRQVIDLDEREQILTTNVWIRQYWADHFLQ 512
Query: 306 WNAGEW-GCSTWLVSSERLWRPDVVLLN 386
WN ++ G + +++ +++W+PDV+L N
Sbjct: 513 WNPDDFSGIKSIIIAPDKVWKPDVLLFN 540
>SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 716
Score = 60.5 bits (140), Expect = 2e-09
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Frame = +3
Query: 285 WIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAAATTAGD--YALRAR--VSNNGSV 449
W + LSWNA E+G S + ++LW+PD+ L N A ++A Y +A+ VS+ G
Sbjct: 119 WKNPLLSWNASEYGGISQVNLEPDQLWKPDIYLYNNADSSADGSLYGFKAKIKVSHTGLN 178
Query: 450 SWIKRLDISTPXSMQLDNXPNDMQTCTFKFGS 545
W+ ++T + + P D Q+CT KFGS
Sbjct: 179 MWLAPTILTTSCKINVKYFPFDQQSCTLKFGS 210
>SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 686
Score = 58.0 bits (134), Expect = 1e-08
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Frame = +3
Query: 225 HANIRESESTVRILADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAA-AT 398
H + + TV L W D L+WN ++G + V +W PD+VL N +
Sbjct: 199 HQQLMGAPVTVACFLPLLQKWYDPWLTWNESDFGGMKSIKVDPSCVWVPDIVLYNNVDSD 258
Query: 399 TAGD---YALRARVSNNGSVSWIKRLDISTPXSMQLDNXPNDMQTCTFKFGS 545
++G+ + + + ++G+V W+ + + + + + N P D Q C +FGS
Sbjct: 259 SSGEMYKFTTKVNIHSDGTVQWLSPIQVKSECKIDITNFPLDEQFCKLEFGS 310
>SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 422
Score = 55.6 bits (128), Expect = 5e-08
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 7/101 (6%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAAATTAGDYALRARV------ 431
+++ W D L+WN ++G + V +W+PD++L N A+T +L ++
Sbjct: 26 IRLYWKDHLLNWNPEDFGGVKSINVEPNNVWKPDILLYNPASTDLRVESLYKKIDTKVIL 85
Query: 432 SNNGSVSWIKRLDISTPXSMQLDNXPNDMQTCTFKFGSRMH 554
S++GS +W+ I T + + P D+Q C KFGS H
Sbjct: 86 SSDGSAAWLSPAIIKTECKVDVRLFPFDVQYCDLKFGSWTH 126
>SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 724
Score = 54.0 bits (124), Expect = 2e-07
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Frame = +3
Query: 252 TVRILADLQMNWIDKRLSWNAGEWGCSTWLVSSER--LWRPDVVLLNAAATTAGDYALR- 422
T+R+ ++ W D +L W+ ++G +V ER +W PDVVLLN A ++ +
Sbjct: 32 TIRLQQIYELAWWDHKLQWDQSKYGGIKEVVLPERGVIWVPDVVLLNNAEKSSMGKPVNE 91
Query: 423 ---ARVSNNGSVSWIKRLDISTPXSMQLDNXPNDMQTCTFKFGS 545
V +NG V W+ + + + M + + P D Q C KF S
Sbjct: 92 GNPVLVESNGVVRWLAPVVLKSRCKMDVRSYPFDEQYCGLKFAS 135
>SB_37593| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 548
Score = 52.8 bits (121), Expect = 4e-07
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Frame = +3
Query: 216 HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAA 392
HLR + V + ++ W + L+WN ++G + ++ ++W PD++L N A
Sbjct: 106 HLRFDISEQQAQLVTVSVWIRQKWTNPMLAWNTSKYGGIESVNLNPAKVWIPDIILYNNA 165
Query: 393 ATT-AGD---YALRARVSNNGSVSWIKRLDISTPXSMQLDNXPNDMQTCTFKFGS 545
T AG Y S++G+ W ++ ++ + P D Q C+ KFGS
Sbjct: 166 DETYAGGLEKYKTSVIASSDGTQEWNSPASFTSTCNINVRYFPFDSQNCSLKFGS 220
>SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 50.0 bits (114), Expect = 3e-06
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN--AAATTAGDYAL--RARVSN 437
+ + W++ L+W+ +G T + V+ +W+PD+VL + T Y RA + +
Sbjct: 64 INLRWVNPFLTWDPKMYGGLTSINVNPNMIWKPDIVLYHNIGFGETGAIYKFDTRATIMH 123
Query: 438 NGSVSWIKRLDISTPXSMQLDNXPNDMQTCTFKFGS 545
NG W +I + ++ + P D Q C KFGS
Sbjct: 124 NGYTEWFAPTEIHSICAIDITYFPFDEQFCKMKFGS 159
>SB_54107| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.4e-35)
Length = 479
Score = 49.2 bits (112), Expect = 4e-06
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Frame = +3
Query: 285 WIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAG---DYALRARVSNNGSV 449
W + L WN +G + VS ++W PD+VL N A A+T G ++ R VS++G
Sbjct: 40 WYNPFLRWNETFYGGIKEINVSPLQVWTPDLVLYNNADASTDGSLENFKTRIIVSSDGKN 99
Query: 450 SWIKRLDISTPXSMQLDNXPNDMQTCTFKFGS 545
W+ + S+ ++++ P D Q C+ KFGS
Sbjct: 100 MWLAPVIFSSSCTIKIKYFPFDDQYCSLKFGS 131
>SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 506
Score = 49.2 bits (112), Expect = 4e-06
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Frame = +3
Query: 255 VRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAAATTAGD----YAL 419
+ I+ + + W ++ L+W+ + G T + ++ +W PD+VL ++A + Y
Sbjct: 39 MEIVQIVNVRWDNELLTWHPSNYEGVQTVRLDAKSVWIPDIVLYDSADSVFSGGHEKYKT 98
Query: 420 RARVSNNGSVSWIKRLDISTPXSMQLDNXPNDMQTCTFKFGS 545
+S +GS +W + + + P D QTC KFGS
Sbjct: 99 HVIISKDGSSAWFSPASFRSTCKIDVTYFPFDEQTCYMKFGS 140
>SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24)
Length = 445
Score = 48.8 bits (111), Expect = 6e-06
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 13/109 (11%)
Frame = +3
Query: 258 RILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA--ATTAGD------ 410
+++ + + W + LSWNA E+ G S VS +R W PD++L N+ +A +
Sbjct: 16 KLIRIIAVRWTNPDLSWNASEYGGVSQIYVSPKRPWTPDILLYNSVRFVDSAEEDDRLGG 75
Query: 411 ----YALRARVSNNGSVSWIKRLDISTPXSMQLDNXPNDMQTCTFKFGS 545
Y + + +NG SW+ + + P D Q CT +FGS
Sbjct: 76 GTEKYKTQIEIRSNGYNSWLSPAMFKSTCDVNTRYFPFDDQHCTLEFGS 124
>SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 275
Score = 47.2 bits (107), Expect = 2e-05
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAAT----TAGDYALRARVSN 437
+ + W + ++WN E+G + + LW+PD+ L N A + + + + +V+
Sbjct: 44 MDVKWENPLVAWNKSEYGGIVQVNLDPSTLWKPDIYLYNNADSGYDGSLYGFTAKIKVNY 103
Query: 438 NGSVSWIKRLDISTPXSMQLDNXPNDMQTCTFKFGS 545
+G+ +W+ +T + + P D Q C KFGS
Sbjct: 104 SGTNTWLAPKIFTTSCKINVKYFPFDQQECRLKFGS 139
>SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 930
Score = 46.4 bits (105), Expect = 3e-05
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAA----TTAGDYALRARVSN 437
L+M W D L WN ++G T + + + +W P V++ N A + R V +
Sbjct: 547 LRMGWKDAFLQWNPADYGGVTQINLEASDIWTPPVIIYNQAGDLGESITSSNTPRPVVRS 606
Query: 438 NGSVSWIKRLDISTPXSMQLDNXPNDMQTCTFKFGS 545
+G+V W+ I + + + P D Q C FGS
Sbjct: 607 DGTVLWMVPTVIKSSCVIDVKYFPFDQQLCKIIFGS 642
>SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 45.6 bits (103), Expect = 5e-05
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGD---YALRARVSN 437
+ + W + L+W+ +G T + V R+WRPD++L N A T G + + ++
Sbjct: 75 IDLKWNNPLLTWDPTHFGNLTSINVDPLRVWRPDLILYNNADRDTDGALDRFYTKVQLKF 134
Query: 438 NGSVSWIKRLDISTPXSMQLDNXPNDMQTCTFKFGS 545
+GS W+ + + + P D Q+C KFGS
Sbjct: 135 DGSSLWLAPIIFKSTCKFDVAYFPFDEQSCILKFGS 170
>SB_7484| Best HMM Match : Neur_chan_memb (HMM E-Value=1.3e-10)
Length = 384
Score = 44.8 bits (101), Expect = 1e-04
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Frame = +3
Query: 285 WIDKRLSWNAGEWGCSTWLVSSER-LWRPDVVLL-NAAATTAG--DYA-LRARVSNNGSV 449
W+++ +W+ E+G +V R +W+PD++L N G D+ R R++++G
Sbjct: 2 WLNQLTTWDPEEYGGVKEVVLQARDVWQPDIILYQNIIQDFDGRLDHTNTRVRITSSGMT 61
Query: 450 SWIKRLDISTPXSMQLDNXPNDMQTCTFKFGSRMH 554
W + T ++ + + P D Q C FGS H
Sbjct: 62 YWSMPFVVVTLCTINVSDFPFDTQQCKLTFGSWQH 96
>SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 434
Score = 44.4 bits (100), Expect = 1e-04
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
Frame = +3
Query: 276 QMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA--ATTAGDYALRARVS--NN 440
+ W D L W+ + G T + V LW+PD+VL N Y +V +
Sbjct: 88 RQTWTDAWLKWDPAKHGGITAINVDPSFLWKPDMVLYNNVNDEDRGEQYLFNTKVIIYST 147
Query: 441 GSVSWIKRLDISTPXSMQLDNXPNDMQTCTFKFGS 545
G + W + T + + P D QTC FGS
Sbjct: 148 GDIEWYSPNILKTHCKIDIQYFPFDTQTCKLTFGS 182
>SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24)
Length = 373
Score = 43.6 bits (98), Expect = 2e-04
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Frame = +3
Query: 153 LLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAG 317
L TY+++ P D + V L L L ++ + T+ ++ ++ W D RL WN
Sbjct: 20 LFRTYNKDVLPKETLDKGVPVRLDLALNQIIDVNKRAQTMTVVIWVRQYWRDPRLRWNVS 79
Query: 318 EW-GCSTWLVSSERLWRPDVVLLNAA 392
+ G ++ + RLW PD+ L N A
Sbjct: 80 AYDGVDNIVIKASRLWLPDITLYNNA 105
>SB_38490| Best HMM Match : Neur_chan_LBD (HMM E-Value=2e-24)
Length = 478
Score = 43.2 bits (97), Expect = 3e-04
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +3
Query: 279 MNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAA 392
+ W++ LSWNA E+G +T V +RLW PD+VL N A
Sbjct: 77 VKWVNPSLSWNASEFGGVNTLHVEPDRLWVPDIVLYNNA 115
>SB_27375| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.3e-07)
Length = 240
Score = 42.7 bits (96), Expect = 4e-04
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Frame = +3
Query: 276 QMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATT---AGDYAL---RARVS 434
+ W + L W+ ++ + + +W PD+ LLN T AG ++ V
Sbjct: 123 ERTWRNPYLKWDKAKYQNRDRVHFDPKEIWVPDISLLNNGDNTVKMAGGRSIFLTNVVVE 182
Query: 435 NNGSVSWIKRLDISTPXSMQLDNXPNDMQTCTFKFGS 545
N G W + + SM L P D QTC KFGS
Sbjct: 183 NTGKCVWSGPVTFTFTCSMALSRWPFDQQTCAMKFGS 219
>SB_46592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 648
Score = 42.3 bits (95), Expect = 5e-04
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Frame = +3
Query: 285 WIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN---AAATTAGDYAL---RARVSNNGS 446
W D L W+ ++ S + +W PDV L+N AG L V +G
Sbjct: 404 WKDPSLQWDKAKYNLHKTRFSPKEIWVPDVSLINNGDKLVHVAGGAELFNADTVVRQSGK 463
Query: 447 VSWIKRLDISTPXSMQLDNXPNDMQTCTFKFGS 545
V WI + ++ ++++ P D Q CT F S
Sbjct: 464 VDWIAQASFTSTCNLRVRFWPMDDQFCTLTFSS 496
>SB_18568| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.5e-22)
Length = 636
Score = 41.1 bits (92), Expect = 0.001
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Frame = +3
Query: 285 WIDKRLSWNAGEWGCSTWLVSS--ERLWRPDVVLLNAAATTA----GDYALRARVSNNGS 446
W DKRL AG+ S L S W+PD NA + D R + +G
Sbjct: 273 WTDKRL---AGKLNLSITLTGSAASNAWKPDPYCYNARQSNMMLEDKDVNSRLSIDPDGK 329
Query: 447 VSWIKRLDISTPXSMQLDNXPNDMQTCTFKFGS 545
+ + + + I M L + P D Q C KFGS
Sbjct: 330 IFYSRGVSIVASCEMDLHDFPLDTQNCYLKFGS 362
>SB_38726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 40.3 bits (90), Expect = 0.002
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 13/138 (9%)
Frame = +3
Query: 171 RESPPDS---KIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTW 338
R S PD ++VV+L + + +++ ++ I L+ W D L +N +++
Sbjct: 68 RPSTPDGGPLQVVVDLVI-ISMSSLDDNNMEYTISFYLRQTWHDPLLRYNKSSLVNAASY 126
Query: 339 LVSS----ERLWRPDVVLLNAAATTAG--DYAL---RARVSNNGSVSWIKRLDISTPXSM 491
+ +++W+PD L N AG D +L RV NG+V++ R+ + M
Sbjct: 127 ATLNYALVDKIWKPDTYLENVKKIDAGSDDKSLVHKGFRVYPNGNVTFSTRISATLSCKM 186
Query: 492 QLDNXPNDMQTCTFKFGS 545
+ N P D Q+C S
Sbjct: 187 EFRNFPMDRQSCPVTISS 204
>SB_53336| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.022)
Length = 91
Score = 40.3 bits (90), Expect = 0.002
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = +3
Query: 351 ERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPXSMQLDNXPNDMQTCT 530
+++W+PD + N ++T + + G V + +R+ + M L N P D Q+C+
Sbjct: 26 KQIWKPDTYINNEKSSTVPENQFLLTIDPEGRVVYSQRMTVVASCMMYLRNYPMDTQSCS 85
Query: 531 FKFGS 545
F S
Sbjct: 86 ISFES 90
>SB_4545| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 38.7 bits (86), Expect = 0.006
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Frame = +3
Query: 285 WIDKRLSWNAGEWGCSTWLVSSE--RLWRPDVVLLNA--AATTAGDYALRARVS--NNGS 446
W D+RL A S L E ++WRPD NA ++ TA D + + ++ NG
Sbjct: 12 WKDERL---ANRLNKSVVLKGDEITKMWRPDPFCYNARESSLTASDDDINSMMTIHPNGD 68
Query: 447 VSWIKRLDISTPXSMQLDNXPNDMQTCTFKFGS 545
V + + I+ M+L + P D Q C K GS
Sbjct: 69 VVYSRMTIITAECEMKLHDFPMDEQQCHLKLGS 101
>SB_37177| Best HMM Match : Neur_chan_LBD (HMM E-Value=5.3)
Length = 79
Score = 37.9 bits (84), Expect = 0.011
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +3
Query: 252 TVRILADLQMNWIDKRLSWNAGEWGCSTWLVSSER--LWRPDVVLLN 386
T+R+ ++ W D +L W+ ++G +V ER +W PDVVLLN
Sbjct: 32 TIRLQQIYELAWWDHKLQWDQSKYGGIKEVVLPERGVIWVPDVVLLN 78
>SB_453| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.1e-08)
Length = 362
Score = 37.9 bits (84), Expect = 0.011
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAAATT---AGDYALRARVSNN 440
+ + W D RL WN ++G +++ S +LW PD+ L N A + V+++
Sbjct: 276 IDLYWTDFRLRWNHTKYGGIKSFVTPSRQLWLPDITLYNNANDNYEKEKEEYYGLTVNSD 335
Query: 441 GSVSWIKRLDISTPXSMQLDNXPNDMQ 521
GS+ W + ++ + P D Q
Sbjct: 336 GSIGWYYPTIFKSSCTIDVTYFPFDDQ 362
>SB_43224| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.002)
Length = 123
Score = 37.5 bits (83), Expect = 0.014
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Frame = +3
Query: 117 ENATSLSLMIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQM 281
++ L L+ D Y++ P D + V + + + + + ++L ++M
Sbjct: 27 QDDNELRLIKDLFFRGYNKNVRPVEDKSMPVEVKFGIAYTQVVDLIEKDQVLISNIWVRM 86
Query: 282 NWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 386
NW + L WNA E+G L +S +W PD+VL N
Sbjct: 87 NWNNHLLRWNASEYGGIDKLNISPTLMWLPDIVLHN 122
>SB_30805| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.9e-06)
Length = 147
Score = 37.1 bits (82), Expect = 0.019
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 7/94 (7%)
Frame = +3
Query: 285 WIDKRLSWNA-GEWGCSTWLVSSERLWRPDVVLLNAAATT---AGD---YALRARVSNNG 443
W D L W ++ + S + +W PDV L+N A + AG + V G
Sbjct: 2 WNDVFLKWRGEAKYQVTKTRFSPQEIWVPDVALINNADKSVRLAGGPELFKTDLNVWQGG 61
Query: 444 SVSWIKRLDISTPXSMQLDNXPNDMQTCTFKFGS 545
V W+ ++ +++ P D Q CT F S
Sbjct: 62 KVEWVAPASFTSDCKLRVRYWPIDDQFCTLTFSS 95
>SB_13360| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 480
Score = 35.9 bits (79), Expect = 0.044
Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 4/134 (2%)
Frame = +3
Query: 141 MIDSLLATYDRESPP---DSKIVVNLTLHLRH-ANIRESESTVRILADLQMNWIDKRLSW 308
++ +L YD+ S P + VN+++ ++ + I+ES + L+ W D RL+
Sbjct: 76 VLKRMLRKYDKYSRPYVGRRAVQVNISMAVQSFSQIKESNMEFEVFMYLRQEWNDPRLAH 135
Query: 309 NAGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPXS 488
S +W PD NA + + NG + + R +
Sbjct: 136 GYRAL-LSLAKDRVNDIWLPDTYFNNANEYEVYIVNQLSLIKPNGDIYYSGRNKVKGACQ 194
Query: 489 MQLDNXPNDMQTCT 530
M L N P D+Q C+
Sbjct: 195 MDLFNFPLDVQRCS 208
>SB_30974| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.9e-07)
Length = 134
Score = 33.9 bits (74), Expect = 0.18
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 411 YALRARVSNNGSVSWIKRLDISTPXSMQLDNXPNDMQTCTFKFGS 545
+ + +VS+ G W+ ++T + + P D Q+CT KFGS
Sbjct: 13 FKAKIKVSHTGLNMWLAPTILTTSCKINVKYFPFDQQSCTLKFGS 57
>SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1758
Score = 28.3 bits (60), Expect(2) = 0.67
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 264 LADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 386
+ DLQ W + L+W+ ++G + V+ E +W PD+V+ N
Sbjct: 1467 IVDLQ--WENPILTWDPRDYGGVQEINVAPEEVWVPDIVIYN 1506
Score = 22.2 bits (45), Expect(2) = 0.67
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 507 PNDMQTCTFKFGSRMH 554
P D Q C KFGS H
Sbjct: 1510 PFDEQKCLLKFGSWTH 1525
>SB_37942| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.7e-05)
Length = 191
Score = 31.9 bits (69), Expect = 0.72
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +3
Query: 192 KIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRP 368
K +V LH + A + S S VR+ +++ W + L WN ++G T V+ +W P
Sbjct: 69 KRIVRPVLHPQDA-VNVSFS-VRLNKLVEVKWENPFLVWNESDYGGVHTLHVTFNDVWVP 126
Query: 369 DVVLLN 386
D+VL N
Sbjct: 127 DIVLYN 132
>SB_42075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 31.5 bits (68), Expect = 0.95
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +3
Query: 357 LWRPDVVLLNAAATT--AGDYALRARVS--NNGSVSWIKRLDISTPXSMQLDNXPNDMQT 524
LW PD NA + + D + + ++ +GS+ + + I M L + P D QT
Sbjct: 17 LWFPDTYCSNAKRSDLMSPDTEIHSSLTLEPDGSIFYSRSAHIVASCEMDLRDFPMDTQT 76
Query: 525 CTFKFGS 545
C FGS
Sbjct: 77 CNLVFGS 83
>SB_46603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 31.5 bits (68), Expect = 0.95
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +3
Query: 357 LWRPDVVLLNAAATT--AGDYALRARVS--NNGSVSWIKRLDISTPXSMQLDNXPNDMQT 524
LW PD NA + + D + + ++ +GS+ + + I M L + P D QT
Sbjct: 144 LWFPDTYCSNAKRSDLMSPDTEIHSSLTLEPDGSIFYSRSAHIVASCEMDLRDFPMDTQT 203
Query: 525 CTFKFGS 545
C FGS
Sbjct: 204 CNLVFGS 210
>SB_55106| Best HMM Match : Neur_chan_memb (HMM E-Value=4.5e-11)
Length = 269
Score = 31.1 bits (67), Expect = 1.3
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 420 RARVSNNGSVSWIKRLDISTPXSMQLDNXPNDMQTCTFKFGS 545
+A V +NG W +I + + + P D Q C KFGS
Sbjct: 21 KATVKHNGYTEWFAPTEIHSICKIDITFFPFDEQFCKLKFGS 62
>SB_4972| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.92)
Length = 88
Score = 31.1 bits (67), Expect = 1.3
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +3
Query: 141 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNA 314
+++ LL YDR P + V +TL L T+ + D+ W + L+WN
Sbjct: 15 LLEKLLTGYDRNERPVLNDNESVTVTLGL----------TLNQIVDVI--WYNPLLTWNV 62
Query: 315 GEWG-CSTWLVSSERLWRPDVVL 380
E+G T VS +W PD+VL
Sbjct: 63 TEYGGLKTINVSPTIIWLPDIVL 85
>SB_27095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 534
Score = 30.3 bits (65), Expect = 2.2
Identities = 31/146 (21%), Positives = 62/146 (42%), Gaps = 9/146 (6%)
Frame = +3
Query: 117 ENATSLSLMIDSLLATYDRESPP---DSKIVVNLTLHLRH-ANIRESESTVRILADLQMN 284
E A + + +D L ++ D+ P +VV + +++ + I + +++ +
Sbjct: 42 EYAKNTTKTLDRLKSSMDKRLRPFFGGKPVVVYVDIYIVNIGEISVTNMDYKLMLYYRQT 101
Query: 285 WIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLNAAATT-----AGDYALRARVSNNGSV 449
W D RL+++ E + +W PD + N ++T +Y L + NG+
Sbjct: 102 WHDPRLAFDLPE-AITVQGGMLNDIWIPDTLFTNEKSSTFHKVTQDNYLLS--IWPNGTT 158
Query: 450 SWIKRLDISTPXSMQLDNXPNDMQTC 527
R+ ++ M L P D QTC
Sbjct: 159 YLSMRISLTGICPMDLRKYPMDTQTC 184
>SB_14827| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8)
Length = 156
Score = 30.3 bits (65), Expect = 2.2
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +3
Query: 285 WIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLN 386
W ++ L+W+ E+G ST V+ +++W PD+ L N
Sbjct: 2 WRNEYLTWDPKEFGGISTINVNVDKVWVPDIYLYN 36
>SB_41593| Best HMM Match : Neur_chan_memb (HMM E-Value=2.1e-08)
Length = 319
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 429 VSNNGSVSWIKRLDISTPXSMQLDNXPNDMQTCTFKFGS 545
V+N G V W + S+++ P D+Q C+ FGS
Sbjct: 21 VANTGKVVWQSPATFRSECSIKIRYWPFDVQKCSMTFGS 59
>SB_37285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +3
Query: 384 NAAATTAGDYALRARVSNNGSVSWIKRLDISTPXSMQLDNXPNDMQTCTFKFGS 545
N A T + + ++ N+G W I + ++ + P D Q C KFGS
Sbjct: 5 NVPAGTLYQFKTKVQLFNDGLCVWYAPTIIQSGCNIDITYFPFDDQLCELKFGS 58
>SB_32914| Best HMM Match : Neur_chan_memb (HMM E-Value=2.1e-08)
Length = 400
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 429 VSNNGSVSWIKRLDISTPXSMQLDNXPNDMQTCTFKFGS 545
V+N G V W + S+++ P D+Q C+ FGS
Sbjct: 102 VANTGKVVWQSPATFRSECSIKIRYWPFDVQKCSMTFGS 140
>SB_19927| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.9e-07)
Length = 301
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 426 RVSNNGSVSWIKRLDISTPXSMQLDNXPNDMQTCTFK 536
R+ NG++ + RL +++ M L N P D Q C K
Sbjct: 64 RIFPNGTLLYSMRLKVTSQCPMDLRNFPMDSQKCRLK 100
>SB_53420| Best HMM Match : Hist_deacetyl (HMM E-Value=0)
Length = 360
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 333 TWLVSSERLWRPDVVLLNAAATTAGDYAL-RARVSNNG 443
TWL+ +WRPD+VL +A D L R ++++NG
Sbjct: 272 TWLLD---MWRPDIVLYDAGVDPHVDDVLGRLKLTDNG 306
>SB_24860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 29.1 bits (62), Expect = 5.1
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Frame = +3
Query: 165 YDRESPP--DSKIVVNLTLHLRHAN---IRESESTVRILADLQMNWIDKRLSWNAGEWGC 329
YD+ P D+ V L + + N I E V + ++ NW D RL+ N +
Sbjct: 14 YDKTERPGVDTGKPVELGVDIHFDNFGRIEEMNMEVDVFLYMRYNWKDPRLA-NFTDKTI 72
Query: 330 STWLVSSERLWRPDVVLLNAAA 395
+ E++WRPD NA A
Sbjct: 73 TFTRGDIEKVWRPDTYCSNAHA 94
>SB_14966| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00043)
Length = 137
Score = 29.1 bits (62), Expect = 5.1
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Frame = +3
Query: 165 YDRESPP--DSKIVVNLTLHLRHAN---IRESESTVRILADLQMNWIDKRLSWNAGEWGC 329
YD+ P D+ V L + + N I E V + ++ NW D RL+ N +
Sbjct: 14 YDKTERPGVDTGKPVELGVDIHFDNFGRIEEMNMEVDVFLYMRYNWKDPRLA-NFTDKTI 72
Query: 330 STWLVSSERLWRPDVVLLNAAA 395
+ E++WRPD NA A
Sbjct: 73 TFTRGDIEKVWRPDTYCSNAHA 94
>SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08)
Length = 428
Score = 29.1 bits (62), Expect = 5.1
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAG-EWGCSTWLVSSERLWRPDVVLLN 386
+ W D L WN G V +W PD+ L+N
Sbjct: 28 IYQEWKDPNLKWNKSIAQGVEEIFVDPSDIWTPDIALMN 66
>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1516
Score = 29.1 bits (62), Expect = 5.1
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -2
Query: 242 LTNVSMSQMQGQVDYDFGVGGRLPIVRCEERVDHE 138
L+++S +G VD FGV + +R +++D+E
Sbjct: 594 LSHISGGDKEGDVDLHFGVNSQTGAIRLNKKLDYE 628
>SB_17868| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.7e-36)
Length = 592
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 435 NNGSVSWIKRLDISTPXSMQLDNXPNDMQTCTFKFGSRMH 554
+NG+ W + + +++ P D QTC KFGS H
Sbjct: 207 SNGTNKWRSPALLKSICKIKVKFFPFDSQTCKLKFGSFSH 246
>SB_15521| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.1e-15)
Length = 296
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Frame = +3
Query: 351 ERLWRPDVVLLNAAATTAGDYALR---ARVSNNGSVSWIKRLDISTPXSMQLDNXPNDMQ 521
+ +W P NA D + NG V + RL I+ + L P+D+Q
Sbjct: 32 DEIWIPSTYFFNAKKAYFHDVTTENYLLMIKPNGDVFYSVRLTITMACKLTLQMFPHDVQ 91
Query: 522 TC 527
C
Sbjct: 92 VC 93
>SB_37132| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-06)
Length = 229
Score = 28.7 bits (61), Expect = 6.7
Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 5/132 (3%)
Frame = +3
Query: 120 NATSLSLMIDSLLATYDRESPPD-SKIVVNLTLHLRHANIRE-SESTVRILAD--LQMNW 287
NA +LS+ I+ LA+YDR+ P+ + V + + + + E E+ + D L+ W
Sbjct: 15 NAHNLSVFINDALASYDRKVRPNYGGLPVMVLIEFKVISFGEIQEANMEYSFDIFLRQWW 74
Query: 288 IDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKR- 464
D R N E + ++ W PD N + + A N+ W +
Sbjct: 75 YDPRFKSNFTE-PFTMAADPTKMFWTPDTYFWNVKRSKY-HHVTHAYTKNDLDYKWNSQG 132
Query: 465 LDISTPXSMQLD 500
++I + Q D
Sbjct: 133 IEIVSSEMAQFD 144
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,491,646
Number of Sequences: 59808
Number of extensions: 422876
Number of successful extensions: 1167
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -