Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_M02
(858 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 299 2e-81
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 296 2e-80
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847... 31 1.2
05_04_0324 - 20273797-20274261 29 4.7
01_05_0125 - 18382402-18382761,18382863-18383036 28 8.3
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 299 bits (733), Expect = 2e-81
Identities = 145/270 (53%), Positives = 188/270 (69%), Gaps = 1/270 (0%)
Frame = +2
Query: 50 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
F+HP HGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE ++PGS
Sbjct: 6 FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPGS 65
Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 409
K++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW
Sbjct: 66 KLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKS 125
Query: 410 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIMEIQ 586
+ + G+K I+ +KM +Y S+VRVIAHTQ++ +K +QKKAH+MEIQ
Sbjct: 126 KKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLMEIQ 185
Query: 587 LNGGTIEDKVKWAREHLEKPIPGRFCVCPR*ND*LHWCHQGQRIQRCHFSLAHKEATPLR 766
+NGGTI DKV + + EK IP + +G+ + + P +
Sbjct: 186 INGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGV-VTRWGVTRLPRK 244
Query: 767 HTRVLRKVACIGAWHPSRVSFXVXRAGQKG 856
R LRKVACIGAWHP+RVS+ V RAGQ G
Sbjct: 245 THRGLRKVACIGAWHPARVSYTVARAGQNG 274
Score = 32.3 bits (70), Expect = 0.51
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 654 VDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR 761
VD+VF +DEMID I +RW +LPR
Sbjct: 208 VDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR 243
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 296 bits (726), Expect = 2e-80
Identities = 144/270 (53%), Positives = 187/270 (69%), Gaps = 1/270 (0%)
Frame = +2
Query: 50 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
F+HP HGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE ++PGS
Sbjct: 6 FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREVEKPGS 65
Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 409
K++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW
Sbjct: 66 KLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKS 125
Query: 410 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIMEIQ 586
+ + G+K I+ +KM +Y SVVRVI HTQ++ +K +QKKAH+MEIQ
Sbjct: 126 KKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAHLMEIQ 185
Query: 587 LNGGTIEDKVKWAREHLEKPIPGRFCVCPR*ND*LHWCHQGQRIQRCHFSLAHKEATPLR 766
+NGGTI DKV + + EK IP + +G+ + + P +
Sbjct: 186 INGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGV-VTRWGVTRLPRK 244
Query: 767 HTRVLRKVACIGAWHPSRVSFXVXRAGQKG 856
R LRKVACIGAWHP+RVS+ V RAGQ G
Sbjct: 245 THRGLRKVACIGAWHPARVSYTVARAGQNG 274
Score = 32.3 bits (70), Expect = 0.51
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 654 VDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR 761
VD+VF +DEMID I +RW +LPR
Sbjct: 208 VDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR 243
>01_06_0083 +
26283492-26283756,26284255-26284467,26284620-26284771,
26284884-26285157,26285277-26285485
Length = 370
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 469 NRKRFQEDDPLL*CCKSHCPHSNEAVKTATKEGSHYGNP 585
N +RF +DPLL CC H P+ A T + + +G+P
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGA--TCDRTATVWGDP 333
>05_04_0324 - 20273797-20274261
Length = 154
Score = 29.1 bits (62), Expect = 4.7
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +2
Query: 128 FPKDDPSKPVHLTAFIGYKAGMTHVVRE--PDRPGSKINKKEIVEAVTIIETPPMVCVGV 301
FP D+P K VH+ G + +T ++ E P + +N EA + P CVGV
Sbjct: 60 FPPDNPQKFVHVHRVFG-ASNVTKLLNELHPYQREDAVNSL-AYEADMRLRDPVYGCVGV 117
Query: 302 VGYIETPHGLRAL 340
+ ++ H LR L
Sbjct: 118 ISVLQ--HQLRQL 128
>01_05_0125 - 18382402-18382761,18382863-18383036
Length = 177
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 383 DVDSLQTYAPPRQSTERVVHEGSQCIQQHRHKPSE 279
++ +L PPR ST R+V E C+ + R + +E
Sbjct: 47 ELGALLPNLPPRASTTRIVEEAIACVGELRARTAE 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,139,275
Number of Sequences: 37544
Number of extensions: 524258
Number of successful extensions: 1200
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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