Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_M02
         (858 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi...   297   5e-81
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi...   291   5e-79
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi...   291   5e-79
At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein simil...    31   0.98 
At1g29195.1 68414.m03572 expressed protein                             30   1.7  

>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
           to ribosomal protein GI:806279 from [Arabidopsis
           thaliana]
          Length = 390

 Score =  297 bits (730), Expect = 5e-81
 Identities = 145/270 (53%), Positives = 187/270 (69%), Gaps = 1/270 (0%)
 Frame = +2

Query: 50  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
           F+HP HGS+GF P+KR+ RHRGKVKAFPKDDP+KP  LT+F+GYKAGMTH+VR+ ++PGS
Sbjct: 6   FEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDVEKPGS 65

Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 409
           K++KKE  EAVTIIETPPMV VGVVGY++TP GLR+L TVWA+H+SE+ RRRFYKNW   
Sbjct: 66  KLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYKNWAKS 125

Query: 410 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIMEIQ 586
                       + E G+K I+   +KM +YCSV+RV+AHTQ++ +K  +QKKAH+ EIQ
Sbjct: 126 KKKAFTRYSKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQKKAHLNEIQ 185

Query: 587 LNGGTIEDKVKWAREHLEKPIPGRFCVCPR*ND*LHWCHQGQRIQRCHFSLAHKEATPLR 766
           +NGG I  KV +A    EK +P            +    +G+  +    +       P +
Sbjct: 186 INGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGV-VTRWGVTRLPRK 244

Query: 767 HTRVLRKVACIGAWHPSRVSFXVXRAGQKG 856
             R LRKVACIGAWHP+RVS+ V RAGQ G
Sbjct: 245 THRGLRKVACIGAWHPARVSYTVARAGQNG 274



 Score = 31.9 bits (69), Expect = 0.56
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 654 VDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR 761
           VD++F +DEMID I            +RW   +LPR
Sbjct: 208 VDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR 243


>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  291 bits (713), Expect = 5e-79
 Identities = 144/270 (53%), Positives = 184/270 (68%), Gaps = 1/270 (0%)
 Frame = +2

Query: 50  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
           F+HP HGS+GF P+KR+ RHRGKVKAFPKDD +KP   TAF+GYKAGMTH+VRE ++PGS
Sbjct: 6   FEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEKPGS 65

Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 409
           K++KKE  EAVTIIETP MV VGVV Y++TP GLR+L TVWA+H+SE+ RRRFYKNW   
Sbjct: 66  KLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWAKS 125

Query: 410 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIMEIQ 586
                      +  E G+K I+   +KM +Y +V+RV+AHTQ++ +K  +QKKAH+MEIQ
Sbjct: 126 KKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAHMMEIQ 185

Query: 587 LNGGTIEDKVKWAREHLEKPIPGRFCVCPR*ND*LHWCHQGQRIQRCHFSLAHKEATPLR 766
           +NGGTI  KV +A    EK IP            +    +G+  +    +       P +
Sbjct: 186 INGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGV-VTRWGVTRLPRK 244

Query: 767 HTRVLRKVACIGAWHPSRVSFXVXRAGQKG 856
             R LRKVACIGAWHP+RVS+ V RAGQ G
Sbjct: 245 THRGLRKVACIGAWHPARVSYTVARAGQNG 274



 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 654 VDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR 761
           +++VF +DEMID I            +RW   +LPR
Sbjct: 208 IEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR 243


>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  291 bits (713), Expect = 5e-79
 Identities = 144/270 (53%), Positives = 184/270 (68%), Gaps = 1/270 (0%)
 Frame = +2

Query: 50  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
           F+HP HGS+GF P+KR+ RHRGKVKAFPKDD +KP   TAF+GYKAGMTH+VRE ++PGS
Sbjct: 6   FEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEKPGS 65

Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 409
           K++KKE  EAVTIIETP MV VGVV Y++TP GLR+L TVWA+H+SE+ RRRFYKNW   
Sbjct: 66  KLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWAKS 125

Query: 410 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIMEIQ 586
                      +  E G+K I+   +KM +Y +V+RV+AHTQ++ +K  +QKKAH+MEIQ
Sbjct: 126 KKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAHMMEIQ 185

Query: 587 LNGGTIEDKVKWAREHLEKPIPGRFCVCPR*ND*LHWCHQGQRIQRCHFSLAHKEATPLR 766
           +NGGTI  KV +A    EK IP            +    +G+  +    +       P +
Sbjct: 186 INGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGV-VTRWGVTRLPRK 244

Query: 767 HTRVLRKVACIGAWHPSRVSFXVXRAGQKG 856
             R LRKVACIGAWHP+RVS+ V RAGQ G
Sbjct: 245 THRGLRKVACIGAWHPARVSYTVARAGQNG 274



 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 654 VDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR 761
           +++VF +DEMID I            +RW   +LPR
Sbjct: 208 IEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR 243


>At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein similar
           to 2,4-dihydroxydec-2-ene-1,10-dioic acid aldolase
           [Sphingopyxis macrogoltabida] GI:23330203; contains Pfam
           profile PF03328: HpcH/HpaI aldolase family
          Length = 358

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 18/74 (24%), Positives = 34/74 (45%)
 Frame = -3

Query: 394 FVEATSTVFRHMLRPDSQQSA*SMRGLNVSNNTDTNHRRSLDDGDSLHDLFLVDF*TGTV 215
           F   T T  R+   P     A ++    ++N + T+ +  L  G++L+ LFL+ F     
Sbjct: 46  FSRKTLTPIRYSSSPADHSPATAVEA--ITNRSKTSLKSRLRGGETLYGLFLLSFSPTLA 103

Query: 214 RFSNHVGHTGLITD 173
             + H G+  ++ D
Sbjct: 104 EIAAHAGYDYVVVD 117


>At1g29195.1 68414.m03572 expressed protein
          Length = 193

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +2

Query: 161 LTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPP 283
           +TA    KA   HV+++P  P S  ++++++ A  I+  PP
Sbjct: 37  ITASEIMKAHPKHVLKKPSSPTSDHDERDVISATKIVIVPP 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,204,798
Number of Sequences: 28952
Number of extensions: 415354
Number of successful extensions: 1059
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)