Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_L24
         (906 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    32   0.006
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              25   0.95 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   3.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   8.8  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 32.3 bits (70), Expect = 0.006
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
 Frame = +1

Query: 118 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRESESTVRILADLQMNW 285
           N +++S ++D+LL  YD    PD       V + + +R    I E + T  +    + +W
Sbjct: 2   NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61

Query: 286 IDKRLSXNAGE 318
           +D+RL+   G+
Sbjct: 62  VDRRLAFQGGK 72


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 25.0 bits (52), Expect = 0.95
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 58  YIILLPFLLTCAIAS-AAECENATSLSLMIDSLLAT 162
           Y ILL  L+TC I S +  C   T  S + D ++AT
Sbjct: 3   YSILLSLLITCLICSPSVHC--GTRPSFVSDEMIAT 36


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = +1

Query: 118 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 285
           N  ++S ++DS   +YD+   P+     + V +T++ L  +++ E +    +    +  W
Sbjct: 8   NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67

Query: 286 IDKRLS 303
            D RL+
Sbjct: 68  TDPRLA 73


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +1

Query: 118 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 285
           N  ++S ++DS   +YD+   P+     + V +T++ L  +++ E      +    +  W
Sbjct: 8   NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67

Query: 286 IDKRLS 303
            D RL+
Sbjct: 68  TDPRLA 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,506
Number of Sequences: 438
Number of extensions: 2215
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)