Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_L23
(922 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 43 4e-06
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 43 4e-06
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 40 2e-05
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 39 6e-05
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 39 6e-05
U63132-1|AAB38392.1| 372|Tribolium castaneum decapentaplegic pr... 24 1.5
AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory recept... 22 5.9
AM292374-1|CAL23186.2| 659|Tribolium castaneum gustatory recept... 22 7.7
AM292345-1|CAL23157.2| 384|Tribolium castaneum gustatory recept... 22 7.7
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 42.7 bits (96), Expect = 4e-06
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Frame = +2
Query: 155 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 331
ES P ++ LTL + ++ E + A L + W D L WN E+ G ++
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82
Query: 332 ERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 427
+LW+PDV++ N+A G + V +NGS
Sbjct: 83 NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGS 115
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 42.7 bits (96), Expect = 4e-06
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Frame = +2
Query: 155 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 331
ES P ++ LTL + ++ E + A L + W D L WN E+ G ++
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82
Query: 332 ERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 427
+LW+PDV++ N+A G + V +NGS
Sbjct: 83 NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGS 115
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 40.3 bits (90), Expect = 2e-05
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +2
Query: 155 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 331
ES P ++ LTL + ++ E + A L + W D L WN E+ G ++
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82
Query: 332 ERLWRPDVVLLNAA 373
+LW+PDV++ N+A
Sbjct: 83 NKLWKPDVLMYNSA 96
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 38.7 bits (86), Expect = 6e-05
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 373
L + W D L WN E+G L ++ +LW+PDV++ N+A
Sbjct: 56 LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSA 96
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 38.7 bits (86), Expect = 6e-05
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 373
L + W D L WN E+G L ++ +LW+PDV++ N+A
Sbjct: 56 LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSA 96
>U63132-1|AAB38392.1| 372|Tribolium castaneum decapentaplegic
protein protein.
Length = 372
Score = 24.2 bits (50), Expect = 1.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 454 MSKRFIPGDGAVIRYTGAESVVPGGGC 374
MS ++ DG+VI E VV G GC
Sbjct: 345 MSMLYLGSDGSVILKNYKEMVVVGCGC 371
>AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory receptor
candidate 40 protein.
Length = 373
Score = 22.2 bits (45), Expect = 5.9
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +3
Query: 465 ISMQLDNWPND 497
+ M LDNW ND
Sbjct: 295 VEMALDNWKND 305
>AM292374-1|CAL23186.2| 659|Tribolium castaneum gustatory receptor
candidate 53 protein.
Length = 659
Score = 21.8 bits (44), Expect = 7.7
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 408 VYLITAPSPGIKRLDISTPISMQLDNWPNDMQTCXFKV 521
VY++TA I + D+ ++L ++ + +QT KV
Sbjct: 362 VYVVTAWICAITKRDMFVEFLLKLVDFDSKLQTMNIKV 399
>AM292345-1|CAL23157.2| 384|Tribolium castaneum gustatory receptor
candidate 24 protein.
Length = 384
Score = 21.8 bits (44), Expect = 7.7
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 408 VYLITAPSPGIKRLDISTPISMQLDNWPNDMQTCXFKV 521
VY++TA I + D+ ++L ++ + +QT KV
Sbjct: 87 VYVVTAWICAITKRDMFVEFLLKLVDFDSKLQTMNIKV 124
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,042
Number of Sequences: 336
Number of extensions: 3177
Number of successful extensions: 19
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25754817
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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