Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_L23
(922 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 47 2e-05
SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24) 44 2e-04
SB_38490| Best HMM Match : Neur_chan_LBD (HMM E-Value=2e-24) 43 3e-04
SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41) 43 4e-04
SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 40 0.002
SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24) 40 0.004
SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_37593| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 38 0.009
SB_37177| Best HMM Match : Neur_chan_LBD (HMM E-Value=5.3) 38 0.011
SB_43224| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.002) 38 0.015
SB_453| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.1e-08) 38 0.015
SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 37 0.020
SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.061
SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.11
SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 33 0.25
SB_54107| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.4e-35) 32 0.57
SB_37942| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.7e-05) 32 0.75
SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.75
SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 31 0.99
SB_4972| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.92) 31 1.3
SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 30 2.3
SB_14827| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8) 30 2.3
SB_46592| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_53420| Best HMM Match : Hist_deacetyl (HMM E-Value=0) 29 5.3
SB_24860| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_14966| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00043) 29 5.3
SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08) 29 5.3
SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_37132| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-06) 29 7.0
SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_35034| Best HMM Match : ENTH (HMM E-Value=0) 28 9.2
>SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 541
Score = 46.8 bits (106), Expect = 2e-05
Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 6/112 (5%)
Frame = +2
Query: 122 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 286
++ LL Y +++ P + + + L + LR ++ E + + I ++ W D L
Sbjct: 35 LLKYLLQNYSKDARPVLNVNDPVQLKLGIMLRQVIDLNERDQILTINVWIRQYWKDHLLK 94
Query: 287 WNAGEWG-CSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWD 439
WN ++G + ++ +R+W+PDV+L N A+T +L ++ N V+ D
Sbjct: 95 WNPDDFGGIKSINIAPDRVWKPDVLLYNRASTDLRFGSLNNKIDTNVIVNHD 146
Score = 41.1 bits (92), Expect = 0.001
Identities = 21/88 (23%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Frame = +2
Query: 122 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 286
+++ L Y +++ P D + + L + LR ++ E E + ++ W D L
Sbjct: 453 LLNYLFQNYSKDARPVLNVDDPVQLKLGIMLRQVIDLDEREQILTTNVWIRQYWADHFLQ 512
Query: 287 WNAGEW-GCSTWLVSSERLWRPDVVLLN 367
WN ++ G + +++ +++W+PDV+L N
Sbjct: 513 WNPDDFSGIKSIIIAPDKVWKPDVLLFN 540
>SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24)
Length = 373
Score = 43.6 bits (98), Expect = 2e-04
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Frame = +2
Query: 134 LLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAG 298
L TY+++ P D + V L L L ++ + T+ ++ ++ W D RL WN
Sbjct: 20 LFRTYNKDVLPKETLDKGVPVRLDLALNQIIDVNKRAQTMTVVIWVRQYWRDPRLRWNVS 79
Query: 299 EW-GCSTWLVSSERLWRPDVVLLNAA 373
+ G ++ + RLW PD+ L N A
Sbjct: 80 AYDGVDNIVIKASRLWLPDITLYNNA 105
>SB_38490| Best HMM Match : Neur_chan_LBD (HMM E-Value=2e-24)
Length = 478
Score = 43.2 bits (97), Expect = 3e-04
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +2
Query: 260 MNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAA 373
+ W++ LSWNA E+G +T V +RLW PD+VL N A
Sbjct: 77 VKWVNPSLSWNASEFGGVNTLHVEPDRLWVPDIVLYNNA 115
>SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41)
Length = 342
Score = 42.7 bits (96), Expect = 4e-04
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Frame = +2
Query: 188 LTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLL 364
LTL+ H ++E ++ L+ W D RL+WN E+ G + S+ +W PD+ +L
Sbjct: 22 LTLYDFHTQDEKNE-VIQTFLILEQMWNDTRLAWNETEYGGIKQMTLRSKLIWTPDISVL 80
Query: 365 NAAATTAG--DYALRARVSNNGSVSW 436
N+A + +R +++ G V W
Sbjct: 81 NSANKDMDLREKNIRLFINSAGEVLW 106
>SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 724
Score = 40.3 bits (90), Expect = 0.002
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Frame = +2
Query: 233 TVRILADLQMNWIDKRLSWNAGEWGCSTWLVSSER--LWRPDVVLLNAAATTAGDYALR- 403
T+R+ ++ W D +L W+ ++G +V ER +W PDVVLLN A ++ +
Sbjct: 32 TIRLQQIYELAWWDHKLQWDQSKYGGIKEVVLPERGVIWVPDVVLLNNAEKSSMGKPVNE 91
Query: 404 ---ARVSNNGSVSW 436
V +NG V W
Sbjct: 92 GNPVLVESNGVVRW 105
>SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 716
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Frame = +2
Query: 266 WIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAAATTAGD--YALRA--RVSNNGSV 430
W + LSWNA E+G S + ++LW+PD+ L N A ++A Y +A +VS+ G
Sbjct: 119 WKNPLLSWNASEYGGISQVNLEPDQLWKPDIYLYNNADSSADGSLYGFKAKIKVSHTGLN 178
Query: 431 SW 436
W
Sbjct: 179 MW 180
>SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24)
Length = 445
Score = 39.5 bits (88), Expect = 0.004
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +2
Query: 239 RILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNA 370
+++ + + W + LSWNA E+ G S VS +R W PD++L N+
Sbjct: 16 KLIRIIAVRWTNPDLSWNASEYGGVSQIYVSPKRPWTPDILLYNS 60
>SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 686
Score = 39.1 bits (87), Expect = 0.005
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Frame = +2
Query: 206 HANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLL-NAAAT 379
H + + TV L W D L+WN ++ G + V +W PD+VL N +
Sbjct: 199 HQQLMGAPVTVACFLPLLQKWYDPWLTWNESDFGGMKSIKVDPSCVWVPDIVLYNNVDSD 258
Query: 380 TAGD---YALRARVSNNGSVSW 436
++G+ + + + ++G+V W
Sbjct: 259 SSGEMYKFTTKVNIHSDGTVQW 280
>SB_37593| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 548
Score = 38.3 bits (85), Expect = 0.009
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Frame = +2
Query: 197 HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLL-NA 370
HLR + V + ++ W + L+WN ++ G + ++ ++W PD++L NA
Sbjct: 106 HLRFDISEQQAQLVTVSVWIRQKWTNPMLAWNTSKYGGIESVNLNPAKVWIPDIILYNNA 165
Query: 371 AATTAG---DYALRARVSNNGSVSWD 439
T AG Y S++G+ W+
Sbjct: 166 DETYAGGLEKYKTSVIASSDGTQEWN 191
>SB_37177| Best HMM Match : Neur_chan_LBD (HMM E-Value=5.3)
Length = 79
Score = 37.9 bits (84), Expect = 0.011
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +2
Query: 233 TVRILADLQMNWIDKRLSWNAGEWGCSTWLVSSER--LWRPDVVLLN 367
T+R+ ++ W D +L W+ ++G +V ER +W PDVVLLN
Sbjct: 32 TIRLQQIYELAWWDHKLQWDQSKYGGIKEVVLPERGVIWVPDVVLLN 78
>SB_43224| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.002)
Length = 123
Score = 37.5 bits (83), Expect = 0.015
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Frame = +2
Query: 98 ENATSLSLMIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQM 262
++ L L+ D Y++ P D + V + + + + + ++L ++M
Sbjct: 27 QDDNELRLIKDLFFRGYNKNVRPVEDKSMPVEVKFGIAYTQVVDLIEKDQVLISNIWVRM 86
Query: 263 NWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 367
NW + L WNA E+G L +S +W PD+VL N
Sbjct: 87 NWNNHLLRWNASEYGGIDKLNISPTLMWLPDIVLHN 122
>SB_453| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.1e-08)
Length = 362
Score = 37.5 bits (83), Expect = 0.015
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAAATT---AGDYALRARVSNN 421
+ + W D RL WN ++G +++ S +LW PD+ L N A + V+++
Sbjct: 276 IDLYWTDFRLRWNHTKYGGIKSFVTPSRQLWLPDITLYNNANDNYEKEKEEYYGLTVNSD 335
Query: 422 GSVSW 436
GS+ W
Sbjct: 336 GSIGW 340
>SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 422
Score = 37.1 bits (82), Expect = 0.020
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAAATTAGDYALRARV------ 412
+++ W D L+WN ++G + V +W+PD++L N A+T +L ++
Sbjct: 26 IRLYWKDHLLNWNPEDFGGVKSINVEPNNVWKPDILLYNPASTDLRVESLYKKIDTKVIL 85
Query: 413 SNNGSVSW 436
S++GS +W
Sbjct: 86 SSDGSAAW 93
>SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 930
Score = 35.5 bits (78), Expect = 0.061
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAA----TTAGDYALRARVSN 418
L+M W D L WN ++G T + + + +W P V++ N A + R V +
Sbjct: 547 LRMGWKDAFLQWNPADYGGVTQINLEASDIWTPPVIIYNQAGDLGESITSSNTPRPVVRS 606
Query: 419 NGSVSW 436
+G+V W
Sbjct: 607 DGTVLW 612
>SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 34.7 bits (76), Expect = 0.11
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN--AAATTAGDYAL--RARVSN 418
+ + W++ L+W+ +G T + V+ +W+PD+VL + T Y RA + +
Sbjct: 64 INLRWVNPFLTWDPKMYGGLTSINVNPNMIWKPDIVLYHNIGFGETGAIYKFDTRATIMH 123
Query: 419 NGSVSW 436
NG W
Sbjct: 124 NGYTEW 129
>SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 506
Score = 33.5 bits (73), Expect = 0.25
Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Frame = +2
Query: 236 VRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAAATTAG----DYAL 400
+ I+ + + W ++ L+W+ + G T + ++ +W PD+VL ++A + Y
Sbjct: 39 MEIVQIVNVRWDNELLTWHPSNYEGVQTVRLDAKSVWIPDIVLYDSADSVFSGGHEKYKT 98
Query: 401 RARVSNNGSVSW 436
+S +GS +W
Sbjct: 99 HVIISKDGSSAW 110
>SB_54107| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.4e-35)
Length = 479
Score = 32.3 bits (70), Expect = 0.57
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = +2
Query: 266 WIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLL-NAAATTAG---DYALRARVSNNGSV 430
W + L WN +G + VS ++W PD+VL NA A+T G ++ R VS++G
Sbjct: 40 WYNPFLRWNETFYGGIKEINVSPLQVWTPDLVLYNNADASTDGSLENFKTRIIVSSDGKN 99
Query: 431 SW 436
W
Sbjct: 100 MW 101
>SB_37942| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.7e-05)
Length = 191
Score = 31.9 bits (69), Expect = 0.75
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +2
Query: 173 KIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRP 349
K +V LH + A + S S VR+ +++ W + L WN ++G T V+ +W P
Sbjct: 69 KRIVRPVLHPQDA-VNVSFS-VRLNKLVEVKWENPFLVWNESDYGGVHTLHVTFNDVWVP 126
Query: 350 DVVLLN 367
D+VL N
Sbjct: 127 DIVLYN 132
>SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 31.9 bits (69), Expect = 0.75
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 373
+ + W + L+W+ +G T + V R+WRPD++L N A
Sbjct: 75 IDLKWNNPLLTWDPTHFGNLTSINVDPLRVWRPDLILYNNA 115
>SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 275
Score = 31.5 bits (68), Expect = 0.99
Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAAT----TAGDYALRARVSN 418
+ + W + ++WN E+G + + LW+PD+ L N A + + + + +V+
Sbjct: 44 MDVKWENPLVAWNKSEYGGIVQVNLDPSTLWKPDIYLYNNADSGYDGSLYGFTAKIKVNY 103
Query: 419 NGSVSW 436
+G+ +W
Sbjct: 104 SGTNTW 109
>SB_4972| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.92)
Length = 88
Score = 31.1 bits (67), Expect = 1.3
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +2
Query: 122 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNA 295
+++ LL YDR P + V +TL L T+ + D+ W + L+WN
Sbjct: 15 LLEKLLTGYDRNERPVLNDNESVTVTLGL----------TLNQIVDVI--WYNPLLTWNV 62
Query: 296 GEWG-CSTWLVSSERLWRPDVVL 361
E+G T VS +W PD+VL
Sbjct: 63 TEYGGLKTINVSPTIIWLPDIVL 85
>SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 434
Score = 30.3 bits (65), Expect = 2.3
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 257 QMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 367
+ W D L W+ + G T + V LW+PD+VL N
Sbjct: 88 RQTWTDAWLKWDPAKHGGITAINVDPSFLWKPDMVLYN 125
>SB_14827| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8)
Length = 156
Score = 30.3 bits (65), Expect = 2.3
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +2
Query: 266 WIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLN 367
W ++ L+W+ E+G ST V+ +++W PD+ L N
Sbjct: 2 WRNEYLTWDPKEFGGISTINVNVDKVWVPDIYLYN 36
>SB_46592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 648
Score = 29.5 bits (63), Expect = 4.0
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 266 WIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 367
W D L W+ ++ S + +W PDV L+N
Sbjct: 404 WKDPSLQWDKAKYNLHKTRFSPKEIWVPDVSLIN 437
>SB_53420| Best HMM Match : Hist_deacetyl (HMM E-Value=0)
Length = 360
Score = 29.1 bits (62), Expect = 5.3
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 314 TWLVSSERLWRPDVVLLNAAATTAGDYAL-RARVSNNG 424
TWL+ +WRPD+VL +A D L R ++++NG
Sbjct: 272 TWLLD---MWRPDIVLYDAGVDPHVDDVLGRLKLTDNG 306
>SB_24860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 29.1 bits (62), Expect = 5.3
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Frame = +2
Query: 146 YDRESPP--DSKIVVNLTLHLRHAN---IRESESTVRILADLQMNWIDKRLSWNAGEWGC 310
YD+ P D+ V L + + N I E V + ++ NW D RL+ N +
Sbjct: 14 YDKTERPGVDTGKPVELGVDIHFDNFGRIEEMNMEVDVFLYMRYNWKDPRLA-NFTDKTI 72
Query: 311 STWLVSSERLWRPDVVLLNAAA 376
+ E++WRPD NA A
Sbjct: 73 TFTRGDIEKVWRPDTYCSNAHA 94
>SB_14966| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00043)
Length = 137
Score = 29.1 bits (62), Expect = 5.3
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Frame = +2
Query: 146 YDRESPP--DSKIVVNLTLHLRHAN---IRESESTVRILADLQMNWIDKRLSWNAGEWGC 310
YD+ P D+ V L + + N I E V + ++ NW D RL+ N +
Sbjct: 14 YDKTERPGVDTGKPVELGVDIHFDNFGRIEEMNMEVDVFLYMRYNWKDPRLA-NFTDKTI 72
Query: 311 STWLVSSERLWRPDVVLLNAAA 376
+ E++WRPD NA A
Sbjct: 73 TFTRGDIEKVWRPDTYCSNAHA 94
>SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08)
Length = 428
Score = 29.1 bits (62), Expect = 5.3
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAG-EWGCSTWLVSSERLWRPDVVLLN 367
+ W D L WN G V +W PD+ L+N
Sbjct: 28 IYQEWKDPNLKWNKSIAQGVEEIFVDPSDIWTPDIALMN 66
>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1516
Score = 29.1 bits (62), Expect = 5.3
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -1
Query: 223 LTNVSMSQMQGQVDYDFGVGGRLPIVRCEERVDHE 119
L+++S +G VD FGV + +R +++D+E
Sbjct: 594 LSHISGGDKEGDVDLHFGVNSQTGAIRLNKKLDYE 628
>SB_37132| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-06)
Length = 229
Score = 28.7 bits (61), Expect = 7.0
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Frame = +2
Query: 101 NATSLSLMIDSLLATYDRESPPD-SKIVVNLTLHLRHANIRE-SESTVRILAD--LQMNW 268
NA +LS+ I+ LA+YDR+ P+ + V + + + + E E+ + D L+ W
Sbjct: 15 NAHNLSVFINDALASYDRKVRPNYGGLPVMVLIEFKVISFGEIQEANMEYSFDIFLRQWW 74
Query: 269 IDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWD 439
D R N E + ++ W PD N + + A N+ W+
Sbjct: 75 YDPRFKSNFTE-PFTMAADPTKMFWTPDTYFWNVKRSKY-HHVTHAYTKNDLDYKWN 129
>SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1758
Score = 28.3 bits (60), Expect = 9.2
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 245 LADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 367
+ DLQ W + L+W+ ++G + V+ E +W PD+V+ N
Sbjct: 1467 IVDLQ--WENPILTWDPRDYGGVQEINVAPEEVWVPDIVIYN 1506
>SB_35034| Best HMM Match : ENTH (HMM E-Value=0)
Length = 455
Score = 28.3 bits (60), Expect = 9.2
Identities = 23/100 (23%), Positives = 37/100 (37%)
Frame = +2
Query: 152 RESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWLVSS 331
R P+ K+ H R +N E E +++ L ++ + + WL S+
Sbjct: 193 RSWEPERKVTNTEIEHCRPSNANEEELQLQLALALSKQEAEEHKELDKEKMRDYAWLSST 252
Query: 332 ERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWDKALG 451
+ P AA A + A VS+ GS W G
Sbjct: 253 PPVADPWGAPQAAAPVAADPWGAPAPVSSAGSNPWSSTNG 292
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,990,840
Number of Sequences: 59808
Number of extensions: 436704
Number of successful extensions: 1179
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2669453024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -