Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_L23
         (922 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ...    29   4.3  
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ...    29   4.3  
At3g55220.1 68416.m06133 splicing factor, putative contains CPSF...    28   7.6  
At3g55200.1 68416.m06131 splicing factor, putative contains CPSF...    28   7.6  

>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 407

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -3

Query: 437 PRRRSRY*IHGRGERSP--RRWLQPRLAVPRQASTSVPRTPAKCCSPIPLRSNS 282
           PRRR      GR   SP  RR+  P    PR +   +  +P +  SP+PLR  S
Sbjct: 259 PRRRPASPSRGRSPSSPPPRRYRSP----PRGSPRRIRGSPVRRRSPLPLRRRS 308


>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 414

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -3

Query: 437 PRRRSRY*IHGRGERSP--RRWLQPRLAVPRQASTSVPRTPAKCCSPIPLRSNS 282
           PRRR      GR   SP  RR+  P    PR +   +  +P +  SP+PLR  S
Sbjct: 266 PRRRPASPSRGRSPSSPPPRRYRSP----PRGSPRRIRGSPVRRRSPLPLRRRS 315


>At3g55220.1 68416.m06133 splicing factor, putative contains CPSF A
           subunit region (PF03178); contains weak WD-40 repeat
           (PF00400); similar to Splicing factor 3B subunit 3
           (SF3b130)/spliceosomal protein/Splicing factor 3B
           subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
           EMBL:HSAJ1443_1
          Length = 1214

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 407 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 318
           GRG RS  R L+P LA+   A + +P  P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455


>At3g55200.1 68416.m06131 splicing factor, putative contains CPSF A
           subunit region (PF03178); contains weak WD-40 repeat
           (PF00400); similar to Splicing factor 3B subunit 3
           (SF3b130)/spliceosomal protein/Splicing factor 3B
           subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
           EMBL:HSAJ1443_1
          Length = 1214

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 407 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 318
           GRG RS  R L+P LA+   A + +P  P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,909,534
Number of Sequences: 28952
Number of extensions: 310523
Number of successful extensions: 865
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2188225800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)