Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_L21
(884 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 52 5e-09
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 52 5e-09
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 51 1e-08
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 51 1e-08
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 51 1e-08
AF025669-1|AAB81523.1| 243|Tribolium castaneum GABA receptor su... 43 3e-06
AJ606487-1|CAE55183.1| 203|Tribolium castaneum Giant protein pr... 25 0.79
AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory recept... 23 3.2
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 52.4 bits (120), Expect = 5e-09
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 2/125 (1%)
Frame = +2
Query: 173 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 349
ES P ++ LTL + ++ E + A L + W D L WN E+ G ++
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82
Query: 350 ERLWRPDVVLLNAA-ATTAGDYALRARVSNXGSVSWIKRLDISTPISMQLDNWPXDMQTC 526
+LW+PDV++ N+A G + V + GS ++ + M + +P D Q C
Sbjct: 83 NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIFKSTCKMDITWFPFDDQHC 142
Query: 527 TFKFG 541
KFG
Sbjct: 143 DMKFG 147
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 52.4 bits (120), Expect = 5e-09
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 2/125 (1%)
Frame = +2
Query: 173 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 349
ES P ++ LTL + ++ E + A L + W D L WN E+ G ++
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82
Query: 350 ERLWRPDVVLLNAA-ATTAGDYALRARVSNXGSVSWIKRLDISTPISMQLDNWPXDMQTC 526
+LW+PDV++ N+A G + V + GS ++ + M + +P D Q C
Sbjct: 83 NKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGSCLYVPPGIFKSTCKMDITWFPFDDQHC 142
Query: 527 TFKFG 541
KFG
Sbjct: 143 DMKFG 147
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 50.8 bits (116), Expect = 1e-08
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Frame = +2
Query: 272 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNXGS 445
L + W D L WN E+G L ++ +LW+PDV++ N+A G + V + GS
Sbjct: 56 LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115
Query: 446 VSWIKRLDISTPISMQLDNWPXDMQTCTFKFG 541
++ + M + +P D Q C KFG
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHCDMKFG 147
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 50.8 bits (116), Expect = 1e-08
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Frame = +2
Query: 272 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNXGS 445
L + W D L WN E+G L ++ +LW+PDV++ N+A G + V + GS
Sbjct: 56 LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115
Query: 446 VSWIKRLDISTPISMQLDNWPXDMQTCTFKFG 541
++ + M + +P D Q C KFG
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHCDMKFG 147
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 50.8 bits (116), Expect = 1e-08
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 2/125 (1%)
Frame = +2
Query: 173 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 349
ES P ++ LTL + ++ E + A L + W D L WN E+ G ++
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82
Query: 350 ERLWRPDVVLLNAA-ATTAGDYALRARVSNXGSVSWIKRLDISTPISMQLDNWPXDMQTC 526
+LW+PDV++ N+A G + V + GS ++ + + + +P D Q C
Sbjct: 83 NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIFKSTCKIDITWFPFDDQHC 142
Query: 527 TFKFG 541
KFG
Sbjct: 143 DMKFG 147
>AF025669-1|AAB81523.1| 243|Tribolium castaneum GABA receptor
subunit protein.
Length = 243
Score = 43.2 bits (97), Expect = 3e-06
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 13/146 (8%)
Frame = +2
Query: 128 SLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNWIDK 295
++S ++DS +YD+ P+ + V +T++ L +++ E + + + W D
Sbjct: 40 NISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDP 99
Query: 296 RLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSNXGSV 448
RL++ G T V SE +W PD +N ATT+ ++ RV + GS+
Sbjct: 100 RLAYGKRP-GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RVHHSGSI 155
Query: 449 SWIKRLDISTPISMQLDNWPXDMQTC 526
+ RL I+ M L P D Q C
Sbjct: 156 TRSIRLTITASCPMNLQYLPMDRQLC 181
>AJ606487-1|CAE55183.1| 203|Tribolium castaneum Giant protein
protein.
Length = 203
Score = 25.0 bits (52), Expect = 0.79
Identities = 19/73 (26%), Positives = 29/73 (39%)
Frame = -3
Query: 252 VDSDSRMLACLKCRVRLTTILESGGDSRSYVARSESIMRDSDVAFSHSAALAIAQVRRNG 73
V S+S CR I + ++ V+ + +DS AF+ +AQV
Sbjct: 56 VSSNSYTPKIKSCRPFKAYIKDPLTLAQGLVSTEMLLKKDSSEAFNEFRTKILAQVHGTN 115
Query: 72 NKNNISRRHFMTT 34
N N + R TT
Sbjct: 116 NGTNKNMRRLSTT 128
>AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory receptor
candidate 40 protein.
Length = 373
Score = 23.0 bits (47), Expect = 3.2
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Frame = +2
Query: 395 TTAGDYALRARVSNXGSV------SWIKRLDISTPISMQLDNWPXD 514
TT G + A + G + SW + ++ + + M LDNW D
Sbjct: 260 TTFGSFIFNANSAIEGIIFFNLAKSWPQLIEKWSRVEMALDNWKND 305
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,749
Number of Sequences: 336
Number of extensions: 2946
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24513621
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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