Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_L19
         (847 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41539| Best HMM Match : PUD (HMM E-Value=0.42)                     176   2e-44
SB_26854| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   1e-05
SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.29 
SB_23266| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.89 
SB_39599| Best HMM Match : Extensin_2 (HMM E-Value=0.09)               31   1.2  
SB_21129| Best HMM Match : Pkinase (HMM E-Value=2.5e-07)               31   1.6  
SB_17844| Best HMM Match : Fibrinogen_C (HMM E-Value=0)                31   1.6  
SB_7580| Best HMM Match : Topoisom_bac (HMM E-Value=0)                 30   2.1  
SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)                30   2.1  
SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_24456| Best HMM Match : Lipase_chap (HMM E-Value=1.3)               29   6.3  
SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)                      29   6.3  
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               29   6.3  
SB_3982| Best HMM Match : DUF1311 (HMM E-Value=2.2)                    29   6.3  
SB_39595| Best HMM Match : WD40 (HMM E-Value=1.10001e-40)              28   8.3  

>SB_41539| Best HMM Match : PUD (HMM E-Value=0.42)
          Length = 1582

 Score =  176 bits (429), Expect = 2e-44
 Identities = 87/190 (45%), Positives = 121/190 (63%), Gaps = 7/190 (3%)
 Frame = +2

Query: 290 YGRPGVELYGQHTNYESIVTQIHFITGTGRLISLCDD---NSLHLWEINEKS----LVEL 448
           +GRPGV+L   H N ++ + ++HF+   GR+IS+CDD   NS+HLWE+N+K     L E+
Sbjct: 430 FGRPGVQLTACHDN-QTRIQELHFLPEQGRVISVCDDGEQNSIHLWEVNKKDGKSVLEEV 488

Query: 449 KSHVFEGKNKKISAICVESSAKNALLGTEGGNIYSLDLSAFTISEDVIYQDVVMQNCPED 628
           K+   EG+ KKIS  C+       LLGTEGGNIY LD+++F + E VIYQDVVMQ+  ED
Sbjct: 489 KTCTLEGRLKKISVCCLSMKTNRLLLGTEGGNIYLLDINSFELQEYVIYQDVVMQSVQED 548

Query: 629 YKVNPGAVESVYEHPKTPTRILIGYNRGLAVLWDRXAXAPTHTFVSNQQLXSLCWNDXGX 808
            K N G+VE++ EHP    +ILIGY +GL VLW+  + +   TF ++  L SL W+  G 
Sbjct: 549 SKTNAGSVEAIQEHPNDSNKILIGYKKGLTVLWNHESCSVQQTFPNSIDLESLSWHHGGD 608

Query: 809 XXXXSXXXGS 838
               +   GS
Sbjct: 609 KFISAHADGS 618


>SB_26854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 28/109 (25%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
 Frame = +2

Query: 374 GRLISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAICVESSAKNALLGTEGGNIYS 553
           G LIS C ++ +HLW + ++  V ++S  F    ++I+ + +   ++   +GTE GN++ 
Sbjct: 1   GALISNCPEDCIHLWNLRQEQPVIVQSLRF--NRERITCLHLPYKSRWLYVGTEKGNVHV 58

Query: 554 LDLSAFTISEDVI-YQDVVMQNCPEDYKVNPGAVESVYEHPKTPTRILI 697
           +++  F +S   I +   +   C    K +PG V  + ++P    +IL+
Sbjct: 59  VNIEKFELSGYTINWNKAIDIKC----KTHPGPVVQITDNPVDSNKILV 103


>SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 884

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +3

Query: 156 RSCRMNYLHSERQSSMASRTERQHSRGIRSSDSRRLVPPPEHSRYTADQASNSTANTPIT 335
           +S +++YL      ++ S+ ERQ +R      +   V  P  + YT+  +SNS A T   
Sbjct: 429 QSEKLDYLRCNWVDTLQSKIERQETRYKGGRITHNFVSSPRQAAYTSGLSSNSIAQTITV 488

Query: 336 N 338
           N
Sbjct: 489 N 489


>SB_23266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 324

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +2

Query: 566 AFTISEDVIYQDVVMQNCPEDYKVNPGAVESVYEHPKTPTRILIGYNRGLAV 721
           +F ++ED+I Q   + NC + +  +    + + ++PK  T + I Y + L V
Sbjct: 106 SFFVAEDIILQGFTLTNCGDWHASSVSKKDWIVDNPKFMTAVFILYCKNLLV 157


>SB_39599| Best HMM Match : Extensin_2 (HMM E-Value=0.09)
          Length = 564

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 177 LHSERQSSMASR-TERQHSRGIRSSDSRRLVPPPEHSRYTADQASNSTANTPITNR 341
           +H  R   +A + T    SR      S  L   P  SRYT++  S+S ANTP  +R
Sbjct: 162 IHESRMDLLACQCTPPYPSRYTNHGRSSWLTNAPHPSRYTSNGLSSSLANTPHPSR 217


>SB_21129| Best HMM Match : Pkinase (HMM E-Value=2.5e-07)
          Length = 786

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +3

Query: 165 RMNYLHSERQSSMASRTERQHSRGIRSSDSRRLVPPPEHSRYTADQASNSTANTP 329
           R N+++ E+     S T+ +HSR   S DSR   P   H R+ +D  S     +P
Sbjct: 306 RDNHMY-EKSIEQPSATKSEHSRAYSSQDSR---PHSHHKRHGSDSVSKDFDASP 356


>SB_17844| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
          Length = 1431

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +2

Query: 566 AFTISEDVIYQDVVMQNCPEDYKVNPGAVESVYEHPKTPTRILIGYNRGLAV 721
           +F ++ED+I Q   + NC + +  +    + + ++PK  T + I Y + L V
Sbjct: 288 SFFVAEDIILQGFTLTNCGDWHASSVSKKDWIVDNPKFMTAVFILYCKTLLV 339



 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +2

Query: 566 AFTISEDVIYQDVVMQNCPEDYKVNPGAVESVYEHPKTPTRILIGYNRGLAV 721
           +F ++ED+I Q   + NC + +  +    + + ++PK  T + I Y + L V
Sbjct: 449 SFFVAEDIILQGFTLTNCGDWHASSVSKKDWIVDNPKFMTAVFILYCKTLLV 500


>SB_7580| Best HMM Match : Topoisom_bac (HMM E-Value=0)
          Length = 856

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 134 GPCRV*TSTFCLPRDDSLRSFSYKIQI*IDDKTTHKRRQEL 12
           GPC+  T  FC+ R D ++SF  +    I  K  H   Q +
Sbjct: 213 GPCQTPTLGFCVERHDQIQSFKPEAYWVIKPKVVHSSGQSV 253


>SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)
          Length = 1671

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 21/71 (29%), Positives = 30/71 (42%)
 Frame = +3

Query: 159  SCRMNYLHSERQSSMASRTERQHSRGIRSSDSRRLVPPPEHSRYTADQASNSTANTPITN 338
            SC   +   +R S ++ R    +S G  S  S    P P  SR  + + S S A+T    
Sbjct: 1435 SCNSVHASRDRGSCLSVRDRNSYSSGHASDSSFSESPGPRQSRNRSLKRSKSAASTRSET 1494

Query: 339  R*SHRYISSQG 371
              S  Y S +G
Sbjct: 1495 ASSSGYESMRG 1505


>SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1803

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
 Frame = +2

Query: 299  PGVELYGQHTNYESIVTQIHFITGTGRLISLCDDNSLHLWEINEKSLVE-LKSHVFEGKN 475
            P  E       +E  VT + F     RL+S+  D  L +W++   +L++ L  H  +G  
Sbjct: 1252 PSDEFLRSLEGHEDRVTSLAFSKNGKRLVSVALDKKLKVWDVESGNLLDTLTGH--DG-- 1307

Query: 476  KKISAICVESSAKNALLGTEGGNIYSLDLSAFTISEDVIYQ---DVVMQNCPEDYKVN 640
                  C  +   N ++ T G N+  L     T S   +     D  M N P+  K++
Sbjct: 1308 --YPVCCAWNPVDNTMVATCGDNLELLIWDLETKSSTRLKSHGIDEAMVNFPDKKKLS 1363


>SB_24456| Best HMM Match : Lipase_chap (HMM E-Value=1.3)
          Length = 456

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +3

Query: 591 YTRMSLCRTAQRITK*TQARWSLYTNTLRLLHVF*SDTTEDWPCSGTEXLXLPH 752
           YTR +L    + IT  TQ R+  YT  L++LH   +D T++     T  L + H
Sbjct: 123 YTR-ALQILHKSITDATQMRYRCYTRALQMLHKSITDVTQEHYRCYTRALQILH 175



 Score = 28.7 bits (61), Expect = 6.3
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +3

Query: 591 YTRMSLCRTAQRITK*TQARWSLYTNTLRLLHVF*SDTTEDWPCSGTEXLXLPH 752
           YTR +L    + +T  TQ  +  YTN L++LH   +D T++     T  L + H
Sbjct: 189 YTR-ALPTLHKCVTDVTQEHYRCYTNALQMLHKCVTDVTQEHYRCYTNALQMLH 241



 Score = 28.3 bits (60), Expect = 8.3
 Identities = 27/110 (24%), Positives = 43/110 (39%)
 Frame = +3

Query: 384 YHYATITAFTCGKSTRNL*WN*SRMYSKVKIKRYRPYASSRQRRTLYWEPKAATFTHWI* 563
           Y Y T    T  K   +      R Y+ V    ++    + Q    Y+          I 
Sbjct: 76  YRYYTRALPTLHKCVTDFTQEHYRRYTNVLQMLHKSITDATQMCYRYYTRALQILHKSIT 135

Query: 564 ALSRSRKMSYTRMSLCRTAQRITK*TQARWSLYTNTLRLLHVF*SDTTED 713
             ++ R   YTR +L    + IT  TQ  +  YT  L++LH   +D T++
Sbjct: 136 DATQMRYRCYTR-ALQMLHKSITDVTQEHYRCYTRALQILHKCVTDITQE 184


>SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)
          Length = 429

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 22/88 (25%), Positives = 36/88 (40%)
 Frame = +3

Query: 117 LYAARASSPLLRGRSCRMNYLHSERQSSMASRTERQHSRGIRSSDSRRLVPPPEHSRYTA 296
           ++    +S  +RG S         R++    R ER  S G+R    ++          T 
Sbjct: 93  VWVPATNSQNIRGTSFLPPIESRSRKTGNVDRPERSLSAGVRDIPQKQSTESKNIPGPTN 152

Query: 297 DQASNSTANTPITNR*SHRYISSQGQAV 380
             +S+S   T  TN  S R I + GQ++
Sbjct: 153 SISSDSRRITKTTNSNSTRLIRTPGQSI 180


>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = +3

Query: 138  SPLLRGRS--CRMNYLHSERQSSMASRTERQHSRGIRSSDSRRLVPPPEHSRYT-ADQAS 308
            SP +R +S  C+   +       + S  +R  +   R S   RL+ PP HS ++  D  S
Sbjct: 1366 SPTIRDKSLECKRALMDDTGHVLLRSGAQRPVANSNRDSYIDRLISPPAHSSFSRVDDGS 1425

Query: 309  NSTAN 323
               +N
Sbjct: 1426 EGVSN 1430


>SB_3982| Best HMM Match : DUF1311 (HMM E-Value=2.2)
          Length = 803

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
 Frame = +3

Query: 57  LDFITKTSQTVVSGQAEC*SLYAARASS--PLLRGRSCRMNYLHSERQSSMASRTERQHS 230
           LD I++  + V+   +        RASS       RS  +N   S  + +  +   R   
Sbjct: 642 LDSISEGKERVIGRSSSFNGRTPRRASSVDSPRNSRSRLLNASSSYERRTQEAGLNRASD 701

Query: 231 RGIRSSDSRRLVPPPEHSRYTADQ 302
           R +RS D   +V PPE  +   DQ
Sbjct: 702 RRVRSLDRNEMVSPPELIQLLKDQ 725


>SB_39595| Best HMM Match : WD40 (HMM E-Value=1.10001e-40)
          Length = 260

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/48 (22%), Positives = 21/48 (43%)
 Frame = +2

Query: 374 GRLISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAICVESSAKN 517
           G ++S   D +  +W   +      + H F G    IS++C  +  +N
Sbjct: 27  GSILSASRDRTTRVWVTEDGGRTYSEGHAFAGHKNFISSVCAMAPTEN 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,212,213
Number of Sequences: 59808
Number of extensions: 560378
Number of successful extensions: 1587
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1581
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)