Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_L19
(847 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 40 0.002
At5g05570.1 68418.m00605 transducin family protein / WD-40 repea... 40 0.003
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 34 0.14
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 33 0.24
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 33 0.32
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 33 0.32
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 33 0.32
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 32 0.55
At5g56080.1 68418.m06997 nicotianamine synthase, putative simila... 31 1.3
At4g01860.2 68417.m00244 transducin family protein / WD-40 repea... 31 1.3
At4g01860.1 68417.m00243 transducin family protein / WD-40 repea... 31 1.3
At4g23730.1 68417.m03414 aldose 1-epimerase family protein simil... 30 1.7
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 30 2.2
At5g23910.1 68418.m02808 kinesin motor protein-related 29 5.1
At5g02600.2 68418.m00195 heavy-metal-associated domain-containin... 29 5.1
At5g02600.1 68418.m00196 heavy-metal-associated domain-containin... 29 5.1
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 29 5.1
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 29 5.1
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 29 5.1
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 29 5.1
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 29 5.1
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 29 5.1
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 29 5.1
At4g31570.1 68417.m04483 expressed protein 28 9.0
At3g45620.1 68416.m04927 transducin family protein / WD-40 repea... 28 9.0
At1g72410.1 68414.m08374 COP1-interacting protein-related simila... 28 9.0
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 40.3 bits (90), Expect = 0.002
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +2
Query: 305 VELYGQHTNYESIVTQIHFITGTGRLISLCDDNSLHLWEINEKSLVE-LKSH 457
++ Y H N + ++ +T R++S +DN +H+WE+N K L++ L+ H
Sbjct: 233 LKTYTGHVNAQYCISSAFSVTNGKRIVSGSEDNCVHMWELNSKKLLQKLEGH 284
Score = 31.5 bits (68), Expect = 0.73
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +2
Query: 299 PGVELYGQHTNYESIVTQIHFITGTGRLISLCDDNSLHLWEINEKSLVE 445
P E + T +E+ ++ + F + ++S DD +L LW++ SL++
Sbjct: 59 PIAEPVQEFTGHENGISDVAFSSDARFIVSASDDKTLKLWDVETGSLIK 107
>At5g05570.1 68418.m00605 transducin family protein / WD-40 repeat
family protein similar to unknown protein (pir||T04661);
contains Pfam PF00400: WD domain, G-beta repeat (4
copies, 2 weak)|8683726|gb|AV524198.1|AV524198
Length = 1124
Score = 39.5 bits (88), Expect = 0.003
Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 9/185 (4%)
Frame = +2
Query: 203 GFPHRASALAWDPXXXXXXXXXXXXXXKVYGRPGVELYGQHTNYESIVTQIHFITGTGRL 382
G P AS LA+DP KV G +E + + F+ G L
Sbjct: 42 GIPSTASLLAFDPIQCLLAVGTLDGRIKVIGGDNIEAILASPK-QLPFKNLEFMQNQGFL 100
Query: 383 ISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAICVESSAKNALLGTEGGNIYSLDL 562
+S+ ++N + +W+++ + S +E I+A + +G E G + L+
Sbjct: 101 VSISNENEIQVWDLDLRQ--PASSLKWESN---ITAFAILHGTGYMYVGDEYGMVSVLNY 155
Query: 563 SA---------FTISEDVIYQDVVMQNCPEDYKVNPGAVESVYEHPKTPTRILIGYNRGL 715
SA + + D + + + + P DY V V + + TR+LI ++ GL
Sbjct: 156 SADEGKLLQLPYYVPTDALSEAAGLSS-PIDYPV----VGLLSQPCSKGTRLLIAFSNGL 210
Query: 716 AVLWD 730
LWD
Sbjct: 211 LFLWD 215
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 33.9 bits (74), Expect = 0.14
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = +2
Query: 344 VTQIHFITGTGR--LISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAICVESSAKN 517
V + + TG + LI+ DD++ +W+ KS V+ EG +SA+C
Sbjct: 188 VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ----TLEGHTHNVSAVCFHPELPI 243
Query: 518 ALLGTEGGNIYSLDLSAFTISEDVIY 595
+ G+E G + + + + + Y
Sbjct: 244 IITGSEDGTVRIWHATTYRLENTLNY 269
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 33.1 bits (72), Expect = 0.24
Identities = 13/52 (25%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +2
Query: 305 VELYGQHTNYESIVTQIHFITGTGRLISLCDDNSLHLWEINEKSLVE-LKSH 457
+++Y HTN +T +T ++S +DN ++LW++ +++++ L+ H
Sbjct: 248 LKVYTGHTNKVFCITSAFSVTNGKYIVSGSEDNCVYLWDLQARNILQRLEGH 299
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 32.7 bits (71), Expect = 0.32
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = +2
Query: 344 VTQIHFITGTGR--LISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAICVESSAKN 517
V + + TG + LI+ DD++ +W+ KS V+ +G +SA+C
Sbjct: 188 VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ----TLDGHTHNVSAVCFHPELPI 243
Query: 518 ALLGTEGGNIYSLDLSAFTISEDVIY 595
+ G+E G + + + + + Y
Sbjct: 244 IITGSEDGTVRIWHATTYRLENTLNY 269
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 32.7 bits (71), Expect = 0.32
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = +2
Query: 344 VTQIHFITGTGR--LISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAICVESSAKN 517
V + + TG + LI+ DD++ +W+ KS V+ +G +SA+C
Sbjct: 188 VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ----TLDGHTHNVSAVCFHPELPI 243
Query: 518 ALLGTEGGNIYSLDLSAFTISEDVIY 595
+ G+E G + + + + + Y
Sbjct: 244 IITGSEDGTVRIWHATTYRLENTLNY 269
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 32.7 bits (71), Expect = 0.32
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = +2
Query: 344 VTQIHFITGTGR--LISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAICVESSAKN 517
V + + TG + LI+ DD++ +W+ KS V+ +G +SA+C
Sbjct: 188 VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ----TLDGHTHNVSAVCFHPELPI 243
Query: 518 ALLGTEGGNIYSLDLSAFTISEDVIY 595
+ G+E G + + + + + Y
Sbjct: 244 IITGSEDGTVRIWHATTYRLENTLNY 269
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 31.9 bits (69), Expect = 0.55
Identities = 15/76 (19%), Positives = 36/76 (47%)
Frame = +2
Query: 287 VYGRPGVELYGQHTNYESIVTQIHFITGTGRLISLCDDNSLHLWEINEKSLVELKSHVFE 466
++ RP ++ T + VT I F+ T +++ D ++ +W +E + H +
Sbjct: 248 LFDRPSGQILSTLTGHSKKVTSIKFVGDTDLVLTASSDKTVRIWGCSEDGNYTSR-HTLK 306
Query: 467 GKNKKISAICVESSAK 514
+ ++ A+ V ++ K
Sbjct: 307 DHSAEVRAVTVHATNK 322
>At5g56080.1 68418.m06997 nicotianamine synthase, putative similar
to nicotianamine synthase [Lycopersicon
esculentum][GI:4753801], nicotianamine synthase 2
[Hordeum vulgare][GI:4894912]
Length = 320
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/56 (26%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = +2
Query: 305 VELYGQHTNYESIVTQIHFITGTGRLISLC--DDNSLHLWEINEKSLVELKSHVFE 466
++LY Q +N ES+ + T +L+S C D ++ + EI+++ + +++SH+ +
Sbjct: 13 MDLYNQISNLESLKPSKNVDTLFRQLVSTCLPTDTNIDVTEIHDEKVKDMRSHLIK 68
>At4g01860.2 68417.m00244 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +2
Query: 326 TNYESIVTQIHFITGTGRLISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAICVES 505
T +E + +I + +++S+ DD S +WEI+ + +V V G + ++ C+
Sbjct: 232 TGHEGSIFRIVWSLDGSKIVSVSDDRSARIWEIDSQEVV---GPVLFGHSVRVWDCCISD 288
Query: 506 S 508
S
Sbjct: 289 S 289
>At4g01860.1 68417.m00243 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +2
Query: 326 TNYESIVTQIHFITGTGRLISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAICVES 505
T +E + +I + +++S+ DD S +WEI+ + +V V G + ++ C+
Sbjct: 232 TGHEGSIFRIVWSLDGSKIVSVSDDRSARIWEIDSQEVV---GPVLFGHSVRVWDCCISD 288
Query: 506 S 508
S
Sbjct: 289 S 289
>At4g23730.1 68417.m03414 aldose 1-epimerase family protein similar
to apospory-associated protein C; APOC [Chlamydomonas
reinhardtii] GI:6970044 Pfam profile PF01263: Aldose
1-epimerase
Length = 306
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 524 VKRSSLTTRRIWPISFYFYLRIHATL 447
+K S T RIWP SF F+LR+ L
Sbjct: 124 LKSSDEDTMRIWPYSFEFHLRVSLAL 149
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Frame = +2
Query: 344 VTQIHFITGTGR--LISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAICVESSAKN 517
V + + TG + LI+ DD++ +W+ KS V+ EG +SA+
Sbjct: 188 VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ----TLEGHTHNVSAVSFHPELPI 243
Query: 518 ALLGTEGGNIYSLDLSAFTISEDVIY 595
+ G+E G + + + + + Y
Sbjct: 244 IITGSEDGTVRIWHATTYRLENTLNY 269
>At5g23910.1 68418.m02808 kinesin motor protein-related
Length = 665
Score = 28.7 bits (61), Expect = 5.1
Identities = 21/67 (31%), Positives = 31/67 (46%)
Frame = +2
Query: 383 ISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAICVESSAKNALLGTEGGNIYSLDL 562
+ C + + I K + L S VFEGK+ + A +S K L+ GN L L
Sbjct: 61 LDYCYEENETTGSILTKEIKPLISTVFEGKDANVIAHGARNSGKTHLI---QGNERELGL 117
Query: 563 SAFTISE 583
+ T+SE
Sbjct: 118 AVLTMSE 124
>At5g02600.2 68418.m00195 heavy-metal-associated domain-containing
protein low similarity to gi:3168840 copper homeostasis
factor; contains Pfam heavy-metal-associated domain
PF00403; predicted proteins, Arabidopsis thaliana
Length = 319
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +3
Query: 201 MASRTERQHSRGIRSSDSRRLVPPPEHSRYTADQASNSTANTPITNR 341
+ R +H+ IR D RRL PPP + +S+ST +TP+ R
Sbjct: 32 LGGRAIDRHNPIIR--DGRRLTPPPSPN-LNPSSSSSSTYHTPLMTR 75
>At5g02600.1 68418.m00196 heavy-metal-associated domain-containing
protein low similarity to gi:3168840 copper homeostasis
factor; contains Pfam heavy-metal-associated domain
PF00403; predicted proteins, Arabidopsis thaliana
Length = 319
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +3
Query: 201 MASRTERQHSRGIRSSDSRRLVPPPEHSRYTADQASNSTANTPITNR 341
+ R +H+ IR D RRL PPP + +S+ST +TP+ R
Sbjct: 32 LGGRAIDRHNPIIR--DGRRLTPPPSPN-LNPSSSSSSTYHTPLMTR 75
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/50 (20%), Positives = 29/50 (58%)
Frame = +2
Query: 347 TQIHFITGTGRLISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAIC 496
TQ+ F TG+ ++ +N++ +++I + + ++F+G + + ++C
Sbjct: 636 TQVRFQPRTGQFLAAASENTVSIFDIENNN---KRVNIFKGHSSNVHSVC 682
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/50 (20%), Positives = 29/50 (58%)
Frame = +2
Query: 347 TQIHFITGTGRLISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAIC 496
TQ+ F TG+ ++ +N++ +++I + + ++F+G + + ++C
Sbjct: 638 TQVRFQPRTGQFLAAASENTVSIFDIENNN---KRVNIFKGHSSNVHSVC 684
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/50 (20%), Positives = 29/50 (58%)
Frame = +2
Query: 347 TQIHFITGTGRLISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAIC 496
TQ+ F TG+ ++ +N++ +++I + + ++F+G + + ++C
Sbjct: 638 TQVRFQPRTGQFLAAASENTVSIFDIENNN---KRVNIFKGHSSNVHSVC 684
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/50 (20%), Positives = 29/50 (58%)
Frame = +2
Query: 347 TQIHFITGTGRLISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAIC 496
TQ+ F TG+ ++ +N++ +++I + + ++F+G + + ++C
Sbjct: 638 TQVRFQPRTGQFLAAASENTVSIFDIENNN---KRVNIFKGHSSNVHSVC 684
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/50 (20%), Positives = 29/50 (58%)
Frame = +2
Query: 347 TQIHFITGTGRLISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAIC 496
TQ+ F TG+ ++ +N++ +++I + + ++F+G + + ++C
Sbjct: 638 TQVRFQPRTGQFLAAASENTVSIFDIENNN---KRVNIFKGHSSNVHSVC 684
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 28.7 bits (61), Expect = 5.1
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Frame = +2
Query: 233 WDPXXXXXXXXXXXXXXKVYGRPGVELYGQHTNYESIV---TQIHFITGTGRL--ISLCD 397
W P ++Y G E QH ++ V I F T +L I+ D
Sbjct: 425 WSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQLCVITCGD 484
Query: 398 DNSLHLWEINEKSLVELKSHVFEGKNKKISAIC 496
D ++ +W+ + +K H FEG + ++C
Sbjct: 485 DKTIKVWD----AATGVKRHTFEGHEAPVYSVC 513
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 28.7 bits (61), Expect = 5.1
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Frame = +2
Query: 233 WDPXXXXXXXXXXXXXXKVYGRPGVELYGQHTNYESIV---TQIHFITGTGRL--ISLCD 397
W P ++Y G E QH ++ V I F T +L I+ D
Sbjct: 425 WSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQLCVITCGD 484
Query: 398 DNSLHLWEINEKSLVELKSHVFEGKNKKISAIC 496
D ++ +W+ + +K H FEG + ++C
Sbjct: 485 DKTIKVWD----AATGVKRHTFEGHEAPVYSVC 513
>At4g31570.1 68417.m04483 expressed protein
Length = 2712
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/25 (40%), Positives = 20/25 (80%)
Frame = +2
Query: 386 SLCDDNSLHLWEINEKSLVELKSHV 460
++ ++N++HL E NEK+ +EL +H+
Sbjct: 666 TMFEENNIHLREENEKAHLELSAHL 690
>At3g45620.1 68416.m04927 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats; similar to
PC326 protein (GI:200241) (PIR2:S37694) [Mus
musculus];Human (H326) translated mRNA - Homo sapiens,
EMBL:HS06631
Length = 481
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 305 VELYGQHTNYESIVTQIHFITGTGRLISLCDDNSLHLW 418
++LYG+ +E V + F + L+S DD + LW
Sbjct: 45 LDLYGKLNGHEGCVNAVEFNSTGDVLVSGSDDRQIMLW 82
>At1g72410.1 68414.m08374 COP1-interacting protein-related similar
to COP1-Interacting ProteinI 7 (CIP7) [Arabidopsis
thaliana] GI:3327870
Length = 1163
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +3
Query: 135 SSPLLRGRSCRMNYLHSERQSSMASRTERQHSRGIRSSDSRRLVPPPEHSRYTADQASNS 314
SS RG+S H E S+A+ TE++ S G S+D +L+ P + D +
Sbjct: 589 SSSSRRGKSSENQVAHKEPSHSIAA-TEKRLSLGGGSADFSKLMTPLVGDKDKGDALRRN 647
Query: 315 TANTPITN 338
++ +T+
Sbjct: 648 LSDLSLTD 655
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,857,916
Number of Sequences: 28952
Number of extensions: 380128
Number of successful extensions: 1124
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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