Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_L18
         (943 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    42   9e-06
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    42   9e-06
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    41   2e-05
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    39   6e-05
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    39   6e-05
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    27   0.21 
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    25   0.85 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   6.0  

>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 41.5 bits (93), Expect = 9e-06
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +2

Query: 233 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 406
           ++ E    +   A L + W D  L WN  E+ G     ++  +LW+PDV++ N+A     
Sbjct: 42  DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFD 101

Query: 407 GDYALRARVSNNG 445
           G +     V +NG
Sbjct: 102 GTFQTNVVVKHNG 114


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 41.5 bits (93), Expect = 9e-06
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +2

Query: 233 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 406
           ++ E    +   A L + W D  L WN  E+ G     ++  +LW+PDV++ N+A     
Sbjct: 42  DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFD 101

Query: 407 GDYALRARVSNNG 445
           G +     V +NG
Sbjct: 102 GTFQTNVVVKHNG 114


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 40.7 bits (91), Expect = 2e-05
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +2

Query: 233 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA 394
           ++ E    +   A L + W D  L WN  E+ G     ++  +LW+PDV++ N+A
Sbjct: 42  DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSA 96


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 38.7 bits (86), Expect = 6e-05
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 275 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 394
           L + W D  L WN  E+G    L ++  +LW+PDV++ N+A
Sbjct: 56  LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSA 96


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 38.7 bits (86), Expect = 6e-05
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 275 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 394
           L + W D  L WN  E+G    L ++  +LW+PDV++ N+A
Sbjct: 56  LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSA 96


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 27.1 bits (57), Expect = 0.21
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = -2

Query: 237 MLACLKCRVRLTTILESGGESRSYVARSEPIMRDSDVAFSHSAALAIAQ 91
           +++ L C +  T +L S GE+R ++   +P    S  + S    + +A+
Sbjct: 228 VVSTLSCYLERTELLRSSGETRLFLTHRKPFHPASTQSLSRWIKMVLAE 276


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 19/73 (26%), Positives = 29/73 (39%)
 Frame = -2

Query: 255 VDSDSRMLACLKCRVRLTTILESGGESRSYVARSEPIMRDSDVAFSHSAALAIAQVRRNG 76
           V S+S       CR     I +    ++  V+    + +DS  AF+      +AQV    
Sbjct: 56  VSSNSYTPKIKSCRPFKAYIKDPLTLAQGLVSTEMLLKKDSSEAFNEFRTKILAQVHGTN 115

Query: 75  NKNNISRRHFMTT 37
           N  N + R   TT
Sbjct: 116 NGTNKNMRRLSTT 128


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 676  APPXLHXSLVXPP 638
            APP +H S V PP
Sbjct: 1795 APPSVHSSTVVPP 1807


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,396
Number of Sequences: 336
Number of extensions: 2562
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26478848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)