Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_L18
         (943 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica...    31   0.84 
At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family pr...    29   4.5  
At5g41190.1 68418.m05006 expressed protein  ; expression support...    28   7.8  

>At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to transcription
           factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 862

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 15/69 (21%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = -2

Query: 225 LKCRVRLTTILESGGESRSYVARSEPIM-RDSDVAFSHSAALAIAQVRRNGNKNNISRRH 49
           + C++ +   LE+    +S ++R   ++  +SD +F  S A+ + +   NG+K ++ +  
Sbjct: 126 IPCQIHVFAKLEASSTVKSTISRGGLVLISESDTSFGLSEAVVVKEQMGNGDKRSVDKIF 185

Query: 48  FMTTDLLKL 22
            +  + +KL
Sbjct: 186 KLVDENVKL 194


>At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family
           protein similar to A. thaliana putative protein
           F6I18.110, GenBank accession number 2980768
          Length = 310

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -1

Query: 250 LGLTNVSMSQMQGQVDYDFGVGGGVPIVRCEERADHEG 137
           LGL N S S   G    D G+GGG P +  +  +  EG
Sbjct: 24  LGLPNFSASSAAGLSGVDGGLGGGAPPMMLQLGSGEEG 61


>At5g41190.1 68418.m05006 expressed protein  ; expression supported
           by MPSS
          Length = 602

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 347 SSERLWRPDVVLLNAAATTAGDYALRARVSNNGLRLL 457
           SSE+ W    +  ++ A   GDYA++  +   GLRLL
Sbjct: 409 SSEQSWSLRALSESSVACITGDYAMQNVILQMGLRLL 445


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,481,525
Number of Sequences: 28952
Number of extensions: 252770
Number of successful extensions: 687
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2256303936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)