Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_L17
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    35   0.018
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    28   1.6  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    28   2.1  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    28   2.1  
SPCC4B3.09c |||mitochondrial ribosomal protein subunit L12|Schiz...    27   4.8  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    26   8.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.4  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 34.7 bits (76), Expect = 0.018
 Identities = 24/80 (30%), Positives = 43/80 (53%)
 Frame = -1

Query: 452 TAVASSSALRSFKIFSKLITG*SSAPTEYPSMSAISATVNTDFLTTGPPSPSSPFNILMR 273
           + ++SSS   +F   S +++  +S+P+   S+S  S++ ++ F +    SPSS     + 
Sbjct: 562 SGISSSSIPSTFSSVSSILSSSTSSPSS-TSLSISSSSTSSTFSSASTSSPSS-----IS 615

Query: 272 SKYRLKHSALSSPGPSTAHL 213
           S      + LSSP PST+ L
Sbjct: 616 SSISSSSTILSSPTPSTSSL 635



 Score = 25.8 bits (54), Expect = 8.4
 Identities = 18/43 (41%), Positives = 29/43 (67%)
 Frame = -1

Query: 458 NLTAVASSSALRSFKIFSKLITG*SSAPTEYPSMSAISATVNT 330
           +LTA++SSSA+ +    S LIT  SS+ T   S+++ SA V++
Sbjct: 722 SLTAMSSSSAIPTSVNSSTLITA-SSSNTLLSSITSSSAIVSS 763


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -1

Query: 434 SALRSFKIFSKLITG*SSAPTEYP--SMSAISATVNTDFLTTGPPSPSS 294
           ++L SF  F    T  SSA   YP  SMSA  ++V+T   T+   S SS
Sbjct: 488 ASLTSFGNFLGTATSYSSASASYPSTSMSASLSSVHTSSATSSSKSSSS 536


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 114 RLRHGASFCARLQTICRGVEESCQRFLVW 28
           RLR   +F A L  IC+GV  SC     W
Sbjct: 476 RLRSVCNFVAFLHQICKGVWSSCSLEKAW 504


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = -1

Query: 380 APTEYPSMSAISATVNTDFLTTGPPSPSSPFNILMRSKYRLKHSALSSPGPSTAHLKNVP 201
           +P++Y S +      +T       P  +SP     +S  R KH+A ++P P +A   + P
Sbjct: 58  SPSDYKSSAHEQRVNHTTDSMAHVPGNNSPLQTPQKSPPRQKHTAPATPIPVSASRHHKP 117

Query: 200 RAS 192
             S
Sbjct: 118 HHS 120


>SPCC4B3.09c |||mitochondrial ribosomal protein subunit
           L12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 206

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 340 VAEMADMLGYSVGADDHPVMSLEKILKDRNAEEDATAVK 456
           + E+  +LG S+      V S  K+LK+   +EDA A+K
Sbjct: 155 IKEVKSLLGLSLVDAKKFVESAPKVLKENILKEDAEAIK 193


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 557 SPRAPCTARGSPPTRDSPPATG*TSPRP 640
           SP+ P  +R SP    S PA G  SP P
Sbjct: 432 SPKRPTYSRSSPLPSASVPALGDGSPDP 459


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +2

Query: 551 PSSPRAPCTARGSPPTRDSPPATG*TSPRPA 643
           PS+P AP    G P     PPA     P PA
Sbjct: 451 PSAPIAPPLPAGMPAAPPLPPAAPAPPPAPA 481


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,853,086
Number of Sequences: 5004
Number of extensions: 55036
Number of successful extensions: 194
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)