Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_L17
         (899 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13056| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.078
SB_47664| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.8  
SB_17380| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.8  
SB_5266| Best HMM Match : VWA (HMM E-Value=0)                          28   8.9  
SB_39797| Best HMM Match : VWA (HMM E-Value=6e-26)                     28   8.9  

>SB_13056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 193

 Score = 35.1 bits (77), Expect = 0.078
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +1

Query: 13  LANSLPNKEALAAFLDASADCLESSTKTCSVAQSILRAYFVLTDHEYGFQQFRKFVTKKR 192
           L+N+LP+ E L+    A  D + SS ++ +     LR+   LT+H YG    ++ +    
Sbjct: 48  LSNTLPDCEMLSVICTALLDHVGSSQQSFATILLALRSMVTLTEHNYGVYHLKRALESNT 107

Query: 193 E 195
           E
Sbjct: 108 E 108


>SB_47664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 329 DFLTTGPPSPSSPFNILMRSKYRLKHSALSSPGP 228
           D L TG  +P   + + ++SK  LK SAL   GP
Sbjct: 449 DDLVTGSNTPEEAYELYVKSKSNLKSSALWWNGP 482


>SB_17380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 727

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 13  LANSLPNKEALAAF--LDASADCLESSTKTCSVAQSILRAYFVLTD 144
           LANSL NKEA+A+   +DA    L+  T    V  S+LR    L+D
Sbjct: 215 LANSLKNKEAIASHNGVDALVSLLQ-HTGDEEVVDSVLRTVKTLSD 259


>SB_5266| Best HMM Match : VWA (HMM E-Value=0)
          Length = 797

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 301 GEGGPVVRKSVLTVAEMADMLGYSVGADDHPVMSLEKILKD 423
           G GG V +  +LT+A       ++V + D+ + +LE I+KD
Sbjct: 108 GVGGQVKKSELLTIANKKAENVFAVDSFDNLMTNLESIMKD 148


>SB_39797| Best HMM Match : VWA (HMM E-Value=6e-26)
          Length = 317

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 301 GEGGPVVRKSVLTVAEMADMLGYSVGADDHPVMSLEKILKD 423
           G GG V +  +LT+A       ++V + D+ + +LE I+KD
Sbjct: 272 GVGGQVKKSELLTIANKKAENVFAVDSFDNLMTNLESIMKD 312


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,015,641
Number of Sequences: 59808
Number of extensions: 470153
Number of successful extensions: 2138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2137
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2586032617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)