Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_L17
(899 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.28
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.28
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.28
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z69902-4|CAA93763.1| 410|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z92779-3|CAD90173.2| 2155|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z79694-10|CAD90170.2| 2155|Caenorhabditis elegans Hypothetical p... 29 3.4
Z73912-6|CAD90190.2| 2155|Caenorhabditis elegans Hypothetical pr... 29 3.4
AF038623-5|AAO91700.1| 531|Caenorhabditis elegans Hypothetical ... 29 4.5
AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc... 29 4.5
AC006638-1|AAK85482.1| 495|Caenorhabditis elegans Cyclase assoc... 29 4.5
Z81544-3|CAB04435.1| 255|Caenorhabditis elegans Hypothetical pr... 29 6.0
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 33.1 bits (72), Expect = 0.28
Identities = 16/30 (53%), Positives = 16/30 (53%)
Frame = +2
Query: 557 SPRAPCTARGSPPTRDSPPATG*TSPRPAG 646
SP P RGSPPT PP SP PAG
Sbjct: 296 SPPPPPPPRGSPPTGSLPPPQAGGSPPPAG 325
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 33.1 bits (72), Expect = 0.28
Identities = 16/30 (53%), Positives = 16/30 (53%)
Frame = +2
Query: 557 SPRAPCTARGSPPTRDSPPATG*TSPRPAG 646
SP P RGSPPT PP SP PAG
Sbjct: 317 SPPPPPPPRGSPPTGSLPPPQAGGSPPPAG 346
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 33.1 bits (72), Expect = 0.28
Identities = 16/30 (53%), Positives = 16/30 (53%)
Frame = +2
Query: 557 SPRAPCTARGSPPTRDSPPATG*TSPRPAG 646
SP P RGSPPT PP SP PAG
Sbjct: 302 SPPPPPPPRGSPPTGSLPPPQAGGSPPPAG 331
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +2
Query: 551 PSSPRAPCTARGSPPTRDSPPATG*TSPRPAGXDYVHDHE 670
P + RAP R P T +PPAT T P PA V + E
Sbjct: 309 PPATRAPPATRAPPATTRAPPAT--TRPAPASQPPVREPE 346
>Z69902-4|CAA93763.1| 410|Caenorhabditis elegans Hypothetical
protein C47D12.5 protein.
Length = 410
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/43 (34%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Frame = -3
Query: 411 LLQAHNRMIVSSHRVPQHVRHFGYSQHGL-SDHRATLAF-FSF 289
++ +++IVSS +PQ ++ Y+Q+G+ S+HR+ L+ +SF
Sbjct: 232 MMDCSDQLIVSSPDLPQGIQFTNYNQNGVFSNHRSNLSITYSF 274
>Z92779-3|CAD90173.2| 2155|Caenorhabditis elegans Hypothetical
protein ZK524.2d protein.
Length = 2155
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 326 FLTTGPPSPSSPFNILMRSKYRLKHS 249
+L + PPSP SP + RS YR+K S
Sbjct: 703 YLNSDPPSPVSPNPQIKRSIYRIKES 728
>Z79694-10|CAD90170.2| 2155|Caenorhabditis elegans Hypothetical
protein ZK524.2d protein.
Length = 2155
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 326 FLTTGPPSPSSPFNILMRSKYRLKHS 249
+L + PPSP SP + RS YR+K S
Sbjct: 703 YLNSDPPSPVSPNPQIKRSIYRIKES 728
>Z73912-6|CAD90190.2| 2155|Caenorhabditis elegans Hypothetical
protein ZK524.2d protein.
Length = 2155
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 326 FLTTGPPSPSSPFNILMRSKYRLKHS 249
+L + PPSP SP + RS YR+K S
Sbjct: 703 YLNSDPPSPVSPNPQIKRSIYRIKES 728
>AF038623-5|AAO91700.1| 531|Caenorhabditis elegans Hypothetical
protein T08B6.9 protein.
Length = 531
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -1
Query: 323 LTTGPPSPSSPFNILMRSKYRLKHSALSSPGPSTAHLKNVPRASRFLVTNFLNC 162
L T S + +NI + KY++ ++ + P T H K RA + T +NC
Sbjct: 427 LETSMFSSDALYNITIH-KYKIDYTDIPLPATETTHFKMGTRAKGYYSTAGINC 479
>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase associated
protein homologprotein 1, isoform a protein.
Length = 1256
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Frame = +2
Query: 551 PSSPRAPCTARGSPPTRDSPPAT--G*TSPRPAGXDYVHDHELXPCRHHGSG 700
PS+P+AP G PP PPA +P P D L + G G
Sbjct: 1000 PSAPKAPAGPGGPPPPPPPPPADFFANIAPPPVDADKASRDALFASLNQGEG 1051
>AC006638-1|AAK85482.1| 495|Caenorhabditis elegans Cyclase
associated protein homologprotein 1, isoform b protein.
Length = 495
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Frame = +2
Query: 551 PSSPRAPCTARGSPPTRDSPPAT--G*TSPRPAGXDYVHDHELXPCRHHGSG 700
PS+P+AP G PP PPA +P P D L + G G
Sbjct: 239 PSAPKAPAGPGGPPPPPPPPPADFFANIAPPPVDADKASRDALFASLNQGEG 290
>Z81544-3|CAB04435.1| 255|Caenorhabditis elegans Hypothetical
protein F49C5.7 protein.
Length = 255
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = -1
Query: 383 SAPTEYPSMSAISATVNTDFLTTGPPSPSS 294
S T S SA T NTD +T PSPSS
Sbjct: 35 STSTTATSSSATETTSNTDSSSTATPSPSS 64
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,489,903
Number of Sequences: 27780
Number of extensions: 342248
Number of successful extensions: 1181
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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