Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_L17
         (899 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    30   1.8  
At2g44790.1 68415.m05574 uclacyanin II strong similarity to ucla...    30   2.4  
At5g57320.1 68418.m07160 villin, putative similar to villin 2 (V...    29   4.2  
At4g15410.1 68417.m02355 UBX domain-containing protein low simil...    29   5.6  
At1g79310.1 68414.m09243 latex-abundant protein, putative (AMC4)...    28   7.3  

>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 551 PSSPRAPCTARGSPPTRDSPPATG*TSPRPA 643
           PSSP  P T  GSPP+  + P+ G + P P+
Sbjct: 495 PSSPTTP-TPGGSPPSSPTTPSPGGSPPSPS 524


>At2g44790.1 68415.m05574 uclacyanin II strong similarity to
           uclacyanin II GI:3399769 from [Arabidopsis thaliana];
           contains Pfam profile PF02298: Plastocyanin-like domain;
           identical to cDNA uclacyanin II GI:3399768
          Length = 202

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 551 PSSPRAPCTARGSPPTRDSPPATG*TSPRP 640
           P++P  P +  G+P T +SPP+ G  SP P
Sbjct: 132 PATPTPPSSTPGTPTTPESPPSGG--SPTP 159


>At5g57320.1 68418.m07160 villin, putative similar to villin 2
           (VLN2) [Arabidopsis thaliana] GI:3415115, villin 3
           (VLN3) [Arabidopsis thaliana] GI:3415117; contains Pfam
           profiles PF00626: Gelsolin repeat, PF02209: Villin
           headpiece domain
          Length = 962

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -2

Query: 154 RIRGQSVRNTLAVSTAPRSKFLC*TPDNLPRRRGKLPALPCLVTN 20
           R+   S R+T+   + PRS+ +  +PD   R RG+ PA   L  N
Sbjct: 753 RVPAYSSRSTVPDKSQPRSRSMTFSPDR-ARVRGRSPAFNALAAN 796


>At4g15410.1 68417.m02355 UBX domain-containing protein low
           similarity to XY40 protein [Rattus norvegicus]
           GI:2547025; contains Pfam profile PF00789: UBX domain
          Length = 421

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -1

Query: 317 TGPPSPSSPFNILMRSKYRLKHSALSSPGPSTAHLKNVPRASRFLVTN 174
           T PP P +PF  + R+       + S+P  S+A +   P  SR LV +
Sbjct: 295 TEPPKPKNPFQGVGRTLGASGSGSSSAPQASSAPMNVAPAPSRGLVVD 342


>At1g79310.1 68414.m09243 latex-abundant protein, putative (AMC4) /
           caspase family protein similar to latex-abundant protein
           [Hevea brasiliensis] gb:AAD13216; contains Pfam profile
           PF00656: ICE-like protease (caspase) p20 domain
          Length = 403

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +1

Query: 295 EEGEGGPVVRKSVLTVAEMADMLGYSVGADDHPVMSLEKILKDRNAEEDATAV-KFLVGH 471
           E GEG  VVR   L +    ++L    G D+  +  +   L D   E+ +  + KF+   
Sbjct: 202 EVGEGDEVVRSRYLPLERFIELLKQQTGQDNIEIGKIRPTLFDVFGEDSSPKIKKFMKVI 261

Query: 472 LQKL 483
           L KL
Sbjct: 262 LTKL 265


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,809,690
Number of Sequences: 28952
Number of extensions: 329576
Number of successful extensions: 1197
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2120147664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)