Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_L16
(863 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 58 9e-11
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 56 3e-10
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 56 5e-10
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 54 1e-09
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 54 1e-09
AF025669-1|AAB81523.1| 243|Tribolium castaneum GABA receptor su... 44 2e-06
AJ606487-1|CAE55183.1| 203|Tribolium castaneum Giant protein pr... 25 0.77
AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory recept... 23 2.3
U63132-1|AAB38392.1| 372|Tribolium castaneum decapentaplegic pr... 22 7.1
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 58.0 bits (134), Expect = 9e-11
Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 2/135 (1%)
Frame = +2
Query: 164 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSS 340
ES P ++ LTL + ++ E + A L + W D L WN E+G L ++
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82
Query: 341 ERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDXWPNDMQTC 517
+LW+PDV++ N+A G + V +NGS ++ + M + +P D Q C
Sbjct: 83 NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIFKSTCKMDITWFPFDDQHC 142
Query: 518 TXKXGSRMHNSDEMD 562
K GS ++ +++D
Sbjct: 143 DMKFGSWTYDGNQLD 157
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 56.4 bits (130), Expect = 3e-10
Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 2/135 (1%)
Frame = +2
Query: 164 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSS 340
ES P ++ LTL + ++ E + A L + W D L WN E+G L ++
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82
Query: 341 ERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDXWPNDMQTC 517
+LW+PDV++ N+A G + V +NGS ++ + + + +P D Q C
Sbjct: 83 NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIFKSTCKIDITWFPFDDQHC 142
Query: 518 TXKXGSRMHNSDEMD 562
K GS ++ +++D
Sbjct: 143 DMKFGSWTYDGNQLD 157
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 55.6 bits (128), Expect = 5e-10
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 2/135 (1%)
Frame = +2
Query: 164 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 340
ES P ++ LTL + ++ E + A L + W D L WN E+ G ++
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82
Query: 341 ERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDXWPNDMQTC 517
+LW+PDV++ N+A G + V + GS ++ + M + +P D Q C
Sbjct: 83 NKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGSCLYVPPGIFKSTCKMDITWFPFDDQHC 142
Query: 518 TXKXGSRMHNSDEMD 562
K GS ++ +++D
Sbjct: 143 DMKFGSWTYDGNQLD 157
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 54.0 bits (124), Expect = 1e-09
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Frame = +2
Query: 263 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 436
L + W D L WN E+G L ++ +LW+PDV++ N+A G + V + GS
Sbjct: 56 LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115
Query: 437 VSWIKRLDISTPISMQLDXWPNDMQTCTXKXGSRMHNSDEMD 562
++ + M + +P D Q C K GS ++ +++D
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGSWTYDGNQLD 157
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 54.0 bits (124), Expect = 1e-09
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Frame = +2
Query: 263 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 436
L + W D L WN E+G L ++ +LW+PDV++ N+A G + V + GS
Sbjct: 56 LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115
Query: 437 VSWIKRLDISTPISMQLDXWPNDMQTCTXKXGSRMHNSDEMD 562
++ + M + +P D Q C K GS ++ +++D
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGSWTYDGNQLD 157
>AF025669-1|AAB81523.1| 243|Tribolium castaneum GABA receptor
subunit protein.
Length = 243
Score = 44.0 bits (99), Expect = 2e-06
Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 13/146 (8%)
Frame = +2
Query: 119 SLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNWIDK 286
++S ++DS +YD+ P+ + V +T++ L +++ E + + + W D
Sbjct: 40 NISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDP 99
Query: 287 RLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSNNGSV 439
RL++ G T V SE +W PD +N ATT+ ++ RV ++GS+
Sbjct: 100 RLAYGKRP-GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RVHHSGSI 155
Query: 440 SWIKRLDISTPISMQLDXWPNDMQTC 517
+ RL I+ M L P D Q C
Sbjct: 156 TRSIRLTITASCPMNLQYLPMDRQLC 181
>AJ606487-1|CAE55183.1| 203|Tribolium castaneum Giant protein
protein.
Length = 203
Score = 25.0 bits (52), Expect = 0.77
Identities = 19/73 (26%), Positives = 29/73 (39%)
Frame = -3
Query: 243 VDSDSRMLACLKCRVRLTTILESGGDSRSYVARSESIMRDSDVAFSHSAALAIAQVRRNG 64
V S+S CR I + ++ V+ + +DS AF+ +AQV
Sbjct: 56 VSSNSYTPKIKSCRPFKAYIKDPLTLAQGLVSTEMLLKKDSSEAFNEFRTKILAQVHGTN 115
Query: 63 NKNNISRRHFMTT 25
N N + R TT
Sbjct: 116 NGTNKNMRRLSTT 128
>AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory receptor
candidate 40 protein.
Length = 373
Score = 23.4 bits (48), Expect = 2.3
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +2
Query: 404 ALRARVSNNGSVSWIKRLDISTPISMQLDXWPND 505
A+ + N + SW + ++ + + M LD W ND
Sbjct: 272 AIEGIIFFNLAKSWPQLIEKWSRVEMALDNWKND 305
>U63132-1|AAB38392.1| 372|Tribolium castaneum decapentaplegic
protein protein.
Length = 372
Score = 21.8 bits (44), Expect = 7.1
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -2
Query: 451 LYPG-DGAVIRYTGAESVVPGGGC 383
LY G DG+VI E VV G GC
Sbjct: 348 LYLGSDGSVILKNYKEMVVVGCGC 371
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,367
Number of Sequences: 336
Number of extensions: 3219
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 23789590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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