Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_L13
         (850 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   2.3  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   4.0  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    22   7.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   7.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   7.0  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   7.0  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   9.3  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    21   9.3  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    21   9.3  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   9.3  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 506 RHTETAGRHCSTPSTTPHGGVSRQCG 583
           RHT T+     TP TTP    S +CG
Sbjct: 281 RHTTTSHNTRGTPRTTP---ASSRCG 303


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 372 LHAFTQRQQLQTARQELSHALYQHDAACR 458
           L  +  R Q+    Q+   ++YQHD   R
Sbjct: 485 LPPYPNRTQITEVTQQTEPSIYQHDQLLR 513


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 482 GDGGARGPRHTETAGRHCSTPSTTP 556
           GDGGAR    + +     STP   P
Sbjct: 50  GDGGARSNADSTSHTDGASTPDVRP 74


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 162  PLVLRKLHLISHNRETF 112
            PL+  ++H ++ N ETF
Sbjct: 1179 PLIRGEVHYLNRNEETF 1195


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 162  PLVLRKLHLISHNRETF 112
            PL+  ++H ++ N ETF
Sbjct: 1179 PLIRGEVHYLNRNEETF 1195


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 482 GDGGARGPRHTETAGRHCSTPSTTP 556
           GDGGAR    + +     STP   P
Sbjct: 206 GDGGARSNADSTSHTDGASTPDVRP 230


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +1

Query: 535 QHPKHHTP 558
           QHP+HH P
Sbjct: 174 QHPQHHQP 181


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 563 GVSRQCGSNRHVCGRGVSS 619
           G S +CG   H+C   +S+
Sbjct: 149 GFSYKCGIQYHICNTVISA 167


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 563 GVSRQCGSNRHVCGRGVSS 619
           G S +CG   H+C   +S+
Sbjct: 145 GFSYKCGIQYHICNTVISA 163


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +1

Query: 535 QHPKHHTP 558
           QHP+HH P
Sbjct: 176 QHPQHHQP 183


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,263
Number of Sequences: 336
Number of extensions: 3992
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23451794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)