Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_L13
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...   106   3e-24
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    27   2.5  

>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score =  106 bits (255), Expect = 3e-24
 Identities = 58/137 (42%), Positives = 75/137 (54%)
 Frame = +3

Query: 120 LYCAISNXXXXXXXXXXTSGAVFERRIIEKYIIENGVDPINGKELRVEDLXXXXXXXXXX 299
           ++C+IS            SG V+E+R+IE+ I E   DP+  +E  +EDL          
Sbjct: 1   MFCSISGETPKEPVISRVSGNVYEKRLIEQVIRETSKDPVTQQECTLEDLVPVKVPDFVR 60

Query: 300 XXXXSATSIPATLKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQHDAACRVIARLTK 479
               SATS+PA L   Q+EWD++ L  F  R+ L   +QELS ALY  DAA RVI+RLTK
Sbjct: 61  PRPPSATSLPALLSLFQEEWDSVALEQFELRRNLTETKQELSTALYSLDAALRVISRLTK 120

Query: 480 EVTAAREALATLKPQAG 530
           E   AREALA      G
Sbjct: 121 ERDEAREALAKFSDNIG 137


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +3

Query: 183 VFERRIIEKYIIENGVDPINGKELRVEDL 269
           +F+ R I  ++ ++G +PING++  + DL
Sbjct: 67  IFDFRFIVPWLRKHGTNPINGQKASMSDL 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,274,186
Number of Sequences: 5004
Number of extensions: 62371
Number of successful extensions: 170
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)