Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_L13
(850 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0316 - 16688911-16689044,16689141-16689211,16689303-166893... 110 1e-24
08_02_1483 - 27451391-27451794,27451883-27452387 36 0.031
03_01_0648 - 4749150-4749275,4749902-4749986,4750761-4750861,475... 33 0.38
05_07_0249 - 28659760-28659831,28660376-28660412,28660691-28660974 32 0.66
12_02_0559 - 20462217-20462780 30 2.0
12_02_0558 - 20453998-20454561 30 2.0
03_01_0245 + 1916718-1917443,1917534-1917719 29 3.5
08_02_1143 + 24659105-24659386,24660171-24660272,24661259-246615... 29 4.7
03_02_0048 - 5265595-5265783,5265882-5265992,5266259-5266547,526... 29 4.7
11_05_0077 - 18866707-18867334,18867410-18867555 29 6.2
07_03_1258 + 25244863-25245282,25246419-25246568,25246665-252468... 29 6.2
03_05_0521 + 25160245-25160883 29 6.2
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 28 8.2
>10_08_0316 -
16688911-16689044,16689141-16689211,16689303-16689354,
16689589-16689685,16689764-16689841,16689938-16690054,
16690172-16690276,16691026-16691100,16691297-16691356,
16691454-16691549,16691838-16691954,16692142-16692260,
16692349-16692490,16694204-16694290,16694852-16694914,
16695081-16695161
Length = 497
Score = 110 bits (265), Expect = 1e-24
Identities = 75/197 (38%), Positives = 98/197 (49%), Gaps = 12/197 (6%)
Frame = +3
Query: 219 ENGVDPINGKELRVEDLXXXXXXXXXXXXXXSATSIPATLKSMQDEWDALMLHAFTQRQQ 398
++G P+ +EL ++D+ A SIP L Q+EWDA+ML +F QQ
Sbjct: 4 DHGKCPVTKEELTMDDIVAVKTNKVVKPRQLQAASIPGLLGMFQNEWDAIMLSSFALEQQ 63
Query: 399 LQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGIA-APQAPHPTEXXXX 575
L TARQELSHALYQHDAACRVIARL KE AR LA + Q + A AP
Sbjct: 64 LHTARQELSHALYQHDAACRVIARLKKERDEARALLAQAERQIPASMAGAAPTAVVSNGK 123
Query: 576 XXXXXXXXXD-----------VVSRLQERATALTQERKRRXRTLPXGLLAPXQIRXFLTL 722
D ++ L E T L+ RK+ R +P L + I + +
Sbjct: 124 RAFEDEVGPDGKKIRPGINPVMIDELTECNTMLSAHRKK--RQVPPTLASIDAIERYTQI 181
Query: 723 ASHPGLHSXSVPGILSL 773
+SHP LH + PGILS+
Sbjct: 182 SSHP-LHKTNKPGILSM 197
>08_02_1483 - 27451391-27451794,27451883-27452387
Length = 302
Score = 36.3 bits (80), Expect = 0.031
Identities = 28/71 (39%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +2
Query: 467 PTHKGGDGGARGPRHTETAGRHCSTPST--TPHGGVSRQCGSNRHVCGRGVSSAGARHRT 640
P H G GG G RH AG S+PST PHGG + GS+ GV++A A +
Sbjct: 227 PEHSSGGGGGMGGRHA-AAGEAGSSPSTAAAPHGG--GEGGSS------GVAAAAAAVSS 277
Query: 641 HAGTEAPXPHP 673
A P P P
Sbjct: 278 SAVVMDPYPTP 288
>03_01_0648 -
4749150-4749275,4749902-4749986,4750761-4750861,
4750933-4751191,4751382-4751434,4752828-4752990,
4753181-4754616
Length = 740
Score = 32.7 bits (71), Expect = 0.38
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +2
Query: 479 GGDGGARGPRHTETAGRHCSTPSTTPHGGVSRQCGSNRHVCGRGVS 616
G GGARG H +G S+P+++ G + GS+R V GR S
Sbjct: 87 GQQGGARGAIHVPLSGGFASSPASSTSAGSAPSPGSDRFV-GRSPS 131
>05_07_0249 - 28659760-28659831,28660376-28660412,28660691-28660974
Length = 130
Score = 31.9 bits (69), Expect = 0.66
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Frame = +2
Query: 422 KSCTVPTRRSVSCDSPTHKGGDGGARGPRHTETAG---RHCSTPSTTPHGGVSRQCGSN 589
+SC R + P G GG G R + G R P TP GG R CG++
Sbjct: 9 RSCRTDARARAA-GRPDLTPGGGGGSGARRSYGCGAGPRAAGWPDLTPGGGAKRSCGAD 66
>12_02_0559 - 20462217-20462780
Length = 187
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +2
Query: 476 KGGDGGARGPRHTETAGRHCSTPSTTPHGGVSRQCGSNRHVCGRGVSSAG 625
+GG GG AGR T P G R+ G R GRG ++ G
Sbjct: 89 RGGGGGGDAGGGDGAAGRR--TVEAAPAAGGGRRQGRERRTAGRGAAAVG 136
>12_02_0558 - 20453998-20454561
Length = 187
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +2
Query: 476 KGGDGGARGPRHTETAGRHCSTPSTTPHGGVSRQCGSNRHVCGRGVSSAG 625
+GG GG AGR T P G R+ G R GRG ++ G
Sbjct: 89 RGGGGGGDAGGGDGAAGRR--TVEAAPAAGGGRRQGRERRTAGRGAAAVG 136
>03_01_0245 + 1916718-1917443,1917534-1917719
Length = 303
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/52 (34%), Positives = 19/52 (36%)
Frame = +2
Query: 455 SCDSPTHKGGDGGARGPRHTETAGRHCSTPSTTPHGGVSRQCGSNRHVCGRG 610
SC GGD RG T T+ R TP T R CG RG
Sbjct: 68 SCCGSGGGGGDNNLRGRSSTTTSARTPRTPKTPCTPTARRLCGVRSRTPRRG 119
>08_02_1143 +
24659105-24659386,24660171-24660272,24661259-24661521,
24661775-24661874,24662080-24662238,24662327-24663147,
24663299-24663618,24665831-24667398
Length = 1204
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -3
Query: 317 GTWRFWLYYRWCFDLNKVLNSQLLAVNRIHAIFYYVLLNDSPF 189
G +RFWL + F + + +L +H FYYVL ++ +
Sbjct: 151 GHYRFWLLWNSAFRVT--YSRMMLYTTPVHGTFYYVLRYEAEY 191
>03_02_0048 -
5265595-5265783,5265882-5265992,5266259-5266547,
5266647-5266903,5266995-5267356,5267447-5267522,
5267618-5267707,5267800-5267891,5267995-5268098,
5268191-5268253,5268609-5268736
Length = 586
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = +3
Query: 111 KMSLYCAISNXXXXXXXXXXTSGAVFERRIIEKYIIENGVDPINGKELRVEDL 269
++ YC G+VF+ I YI + G P+ G L+ EDL
Sbjct: 36 RLPFYCCALTFLPFEDPVCTADGSVFDLMSIIPYIKKFGKHPVTGTPLKQEDL 88
>11_05_0077 - 18866707-18867334,18867410-18867555
Length = 257
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Frame = +2
Query: 446 RSVSCDSPTHKGGDGGARGPR--HTETAGRHCSTPSTTPHGGVSRQCGSNR 592
R+V+ P GG GG G T G C+ P H G G+ R
Sbjct: 24 RAVAVPLPAAGGGGGGGGGEAGVRRRTRGTWCAAPDAVAHRGEDPGVGARR 74
>07_03_1258 +
25244863-25245282,25246419-25246568,25246665-25246877,
25246979-25247068,25247311-25247424,25247881-25248150,
25248251-25248407,25248691-25248741,25248742-25248819,
25249357-25249457,25249832-25250002,25250136-25250210,
25251527-25251793
Length = 718
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -1
Query: 418 SCLAVCNCCLC-VKACNIRASHSSCMLFSVAGIDVALG 308
S LA C CC+C +KACN + ++ V LG
Sbjct: 667 SRLADCLCCMCCIKACNKMNDQCAIVMTQVCAAFACLG 704
>03_05_0521 + 25160245-25160883
Length = 212
Score = 28.7 bits (61), Expect = 6.2
Identities = 21/63 (33%), Positives = 25/63 (39%)
Frame = +2
Query: 449 SVSCDSPTHKGGDGGARGPRHTETAGRHCSTPSTTPHGGVSRQCGSNRHVCGRGVSSAGA 628
S+SC S HKG GG G R AG G + + V G G +AG
Sbjct: 18 SISCKSTRHKGRAGG--GGRAAAVAGAREPGKGAAVVAGARERVTA---VAGAGAPAAGV 72
Query: 629 RHR 637
R R
Sbjct: 73 RER 75
>01_06_0823 +
32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 543 GVLQCRPAVSVWRGPLAPPSP 481
G+L C P VS RGP+ PP P
Sbjct: 873 GILPC-PPVSAHRGPVIPPPP 892
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,160,867
Number of Sequences: 37544
Number of extensions: 498630
Number of successful extensions: 1794
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1789
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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