Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_L13
(850 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11437| Best HMM Match : No HMM Matches (HMM E-Value=.) 109 2e-24
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 33 0.22
SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.51
SB_52196| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_15579| Best HMM Match : VWA_CoxE (HMM E-Value=2.5) 30 2.7
SB_47794| Best HMM Match : U-box (HMM E-Value=1.2e-28) 30 2.7
SB_46019| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_45072| Best HMM Match : Kazal_2 (HMM E-Value=5.8e-06) 29 3.6
SB_24063| Best HMM Match : OAR (HMM E-Value=2.8) 29 4.8
SB_17683| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23) 29 6.3
SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_11437| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 298
Score = 109 bits (263), Expect = 2e-24
Identities = 65/119 (54%), Positives = 75/119 (63%), Gaps = 10/119 (8%)
Frame = +3
Query: 414 QELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGI-------AAPQAPH---PTE 563
+ELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGI AAP A
Sbjct: 56 KELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGIVPTPALVAAPVALSVLADES 115
Query: 564 XXXXXXXXXXXXXDVVSRLQERATALTQERKRRXRTLPXGLLAPXQIRXFLTLASHPGL 740
+V+ +LQE+AT LT ERK+R + +P L +IR F +ASHP L
Sbjct: 116 MEVQAGEEGGMTEEVLQKLQEKATLLTAERKKRGKKVPEDLTPADEIRNFTQIASHPEL 174
Score = 56.4 bits (130), Expect = 3e-08
Identities = 25/52 (48%), Positives = 33/52 (63%)
Frame = +3
Query: 114 MSLYCAISNXXXXXXXXXXTSGAVFERRIIEKYIIENGVDPINGKELRVEDL 269
M+ YC+IS+ SG VFERR+IEKYI ENG DP+NG+ + + L
Sbjct: 1 MAFYCSISHEVPEHPCISPLSGNVFERRLIEKYIAENGTDPVNGEPMSEDQL 52
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 33.5 bits (73), Expect = 0.22
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +2
Query: 476 KGGDGGARGPRHTETAGRHCSTPSTTPHGG--VSR-QCGSNRHVCGRGVSSAG 625
+GG GGARG R T T R C T T G V+R C + R V V G
Sbjct: 1019 RGGRGGARGRRATTTTTRRCVTHKTQRADGTHVTRSNCVATRRVDNNQVGRGG 1071
>SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 32.3 bits (70), Expect = 0.51
Identities = 24/75 (32%), Positives = 24/75 (32%)
Frame = +2
Query: 479 GGDGGARGPRHTETAGRHCSTPSTTPHGGVSRQCGSNRHVCGRGVSSAGARHRTHAGTEA 658
G D G G H T H T HGG R R G G R H GT
Sbjct: 52 GRDHGGTGRDHGGTGRDHGGTGRD--HGGTRRDHDGTRRDHGGTRRDHGGTRRDHGGTRR 109
Query: 659 PXPHPARXTAGTRXD 703
R GTR D
Sbjct: 110 DHGGTRRDHGGTRRD 124
Score = 31.9 bits (69), Expect = 0.68
Identities = 23/72 (31%), Positives = 23/72 (31%)
Frame = +2
Query: 479 GGDGGARGPRHTETAGRHCSTPSTTPHGGVSRQCGSNRHVCGRGVSSAGARHRTHAGTEA 658
G D G G H T H T HGG R G R G G R H GT
Sbjct: 66 GRDHGGTGRDHGGTRRDHDGT--RRDHGGTRRDHGGTRRDHGGTRRDHGGTRRDHGGTRR 123
Query: 659 PXPHPARXTAGT 694
R GT
Sbjct: 124 DHDGTGRDHGGT 135
Score = 29.1 bits (62), Expect = 4.8
Identities = 23/75 (30%), Positives = 23/75 (30%)
Frame = +2
Query: 479 GGDGGARGPRHTETAGRHCSTPSTTPHGGVSRQCGSNRHVCGRGVSSAGARHRTHAGTEA 658
G D G G H T H T H G R G R G G R H GT
Sbjct: 59 GRDHGGTGRDHGGTGRDHGGT--RRDHDGTRRDHGGTRRDHGGTRRDHGGTRRDHGGTRR 116
Query: 659 PXPHPARXTAGTRXD 703
R GT D
Sbjct: 117 DHGGTRRDHDGTGRD 131
Score = 28.3 bits (60), Expect = 8.3
Identities = 27/90 (30%), Positives = 27/90 (30%), Gaps = 2/90 (2%)
Frame = +2
Query: 440 TRRSVSCDSPTHKGG--DGGARGPRHTETAGRHCSTPSTTPHGGVSRQCGSNRHVCGRGV 613
TRR H G D G H T H T HGG R G G
Sbjct: 9 TRRDHGGTGRDHGGTRRDHGGTRRDHGGTGRDHGGTGRD--HGGTGRDHGGTGRDHGGTG 66
Query: 614 SSAGARHRTHAGTEAPXPHPARXTAGTRXD 703
G R H GT R GTR D
Sbjct: 67 RDHGGTGRDHGGTRRDHDGTRRDHGGTRRD 96
>SB_52196| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/51 (31%), Positives = 21/51 (41%)
Frame = +2
Query: 563 GVSRQCGSNRHVCGRGVSSAGARHRTHAGTEAPXPHPARXTAGTRXDQXIP 715
G R+CG R CG+G RH+ A P P T+ Q +P
Sbjct: 196 GPGRRCGGPRGHCGKGRGPRCNRHQEKAKESTEQPQPG--TSAEEQGQEVP 244
>SB_15579| Best HMM Match : VWA_CoxE (HMM E-Value=2.5)
Length = 691
Score = 29.9 bits (64), Expect = 2.7
Identities = 23/43 (53%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Frame = +2
Query: 485 DGGARGP--RHTETAGRHCSTPSTTPHGGVSRQCGSNR-HVCG 604
DGGARG RH+ TA R CST TT VS+ GS++ HV G
Sbjct: 126 DGGARGNMIRHS-TAKRLCST-ITTSSQSVSQADGSSQLHVVG 166
>SB_47794| Best HMM Match : U-box (HMM E-Value=1.2e-28)
Length = 121
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 171 TSGAVFERRIIEKYIIENGVDPINGKELRVEDL 269
TSG + ++ II ++++ + DP N K L V L
Sbjct: 54 TSGKIMDKEIISRHLLSDQSDPFNRKHLTVSML 86
>SB_46019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 202
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -1
Query: 400 NCCLCVKACNIRASHSSCMLFSVAGIDVALGGFGFTIGGV 281
NC L ++C R + CM++ + + V LG G +GG+
Sbjct: 106 NCILWGESCGQRGN---CMVYDMGTLSVYLGVMGLIVGGI 142
>SB_45072| Best HMM Match : Kazal_2 (HMM E-Value=5.8e-06)
Length = 361
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -1
Query: 400 NCCLCVKACNIRASHSSCMLFSVAGIDVALGGFGFTIGGV 281
NC L ++C R + CM++ + + V LG G +GG+
Sbjct: 265 NCILWGESCGQRGN---CMVYDMGTLSVYLGVMGLIVGGI 301
>SB_24063| Best HMM Match : OAR (HMM E-Value=2.8)
Length = 144
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 367 RASHSSCMLFSVAGIDVALGGFGFTIGGVLISI 269
R + SS S AG+ V+L G G IGG L+ +
Sbjct: 53 RNNASSTGALSSAGVGVSLSGIGVLIGGPLVGV 85
>SB_17683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 907
Score = 28.7 bits (61), Expect = 6.3
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +3
Query: 330 ATLKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALA 509
A K +WD+ +F R L+ Q+ + L Q VIAR K++ A R LA
Sbjct: 759 AVAKMTNSDWDSRREESFIARSFLK--EQQATEQLRQR---LEVIARKQKDIAATRAGLA 813
Query: 510 T 512
T
Sbjct: 814 T 814
>SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)
Length = 434
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 530 HCSTPSTTPHGGVSRQCGSNRHVCGRGVSSAGARHRTHAGTEAPXPHPA 676
H STP+T PH + ++ H+ + H THA T PH A
Sbjct: 122 HASTPTTHPHITHASTPTTHPHITHASTPTTHP-HITHASTPTTHPHIA 169
>SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = +3
Query: 333 TLKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQ-HDAACRVIARLTKEVTAAREALA 509
TL+ Q D ++ + + L+ RQ A+ + HD K A++ +
Sbjct: 307 TLEEKQKLQDKILEEERKRLENLEKERQAAQQAMQEAHDKLAAAEEAAKKASEEAKKKVR 366
Query: 510 TLKPQAGIAAPQAPH 554
+K +G+A P PH
Sbjct: 367 EIKTCSGLARPIGPH 381
>SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 419
Score = 28.3 bits (60), Expect = 8.3
Identities = 21/77 (27%), Positives = 29/77 (37%)
Frame = +2
Query: 398 VADC*TRIKSCTVPTRRSVSCDSPTHKGGDGGARGPRHTETAGRHCSTPSTTPHGGVSRQ 577
V C T K C +R +C + G G + T+G+ C T G
Sbjct: 223 VKGCGTCGKGCGTCGKRCRTCYAGCGTCGKGWGTCGKGCRTSGKGCGTC-----GKGCGT 277
Query: 578 CGSNRHVCGRGVSSAGA 628
CG CG+G + GA
Sbjct: 278 CGKGCGTCGKGCGTCGA 294
>SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1931
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = -3
Query: 302 WLYYRWCFDLNKVLNSQLLA--VNRIHAIFYYVLLNDSPFK 186
W Y DL L +L R H +F+YVL ND P +
Sbjct: 128 WRGYAEMTDLQNTLKVKLDIPYTGRYHVVFHYVLENDKPVR 168
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,188,619
Number of Sequences: 59808
Number of extensions: 560211
Number of successful extensions: 1851
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1829
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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