Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_L13
(850 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical pr... 181 5e-46
Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical pr... 33 0.26
U97403-2|AAB52472.2| 649|Caenorhabditis elegans Hypothetical pr... 31 1.4
U58746-5|AAB00625.1| 310|Caenorhabditis elegans Hypothetical pr... 30 1.8
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 29 4.2
AC025724-8|AAG23381.1| 460|Caenorhabditis elegans Hypothetical ... 29 4.2
AL032630-1|CAA21558.1| 366|Caenorhabditis elegans Hypothetical ... 29 5.5
U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily ass... 28 9.6
>U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical
protein T10F2.4 protein.
Length = 492
Score = 181 bits (441), Expect = 5e-46
Identities = 98/221 (44%), Positives = 129/221 (58%), Gaps = 1/221 (0%)
Frame = +3
Query: 114 MSLYCAISNXXXXXXXXXXTSGAVFERRIIEKYIIENGVDPINGKELRVEDLXXXXXXXX 293
MS C IS SG +F+RR+I K+I ENG DPI+ EL + L
Sbjct: 1 MSFVCGISGELTEDPVVSQVSGHIFDRRLIVKFIAENGTDPISHGELSEDQLVSLKSGGT 60
Query: 294 XXXXXX-SATSIPATLKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQHDAACRVIAR 470
S TSIP+ LK +QDEWD +ML++F+ RQQLQ ARQELSH+LYQHDAACRVI+R
Sbjct: 61 GSAPRNVSGTSIPSLLKMLQDEWDTVMLNSFSLRQQLQIARQELSHSLYQHDAACRVISR 120
Query: 471 LTKEVTAAREALATLKPQAGIAAPQAPHPTEXXXXXXXXXXXXXDVVSRLQERATALTQE 650
L+KE+TAAREAL+TLKP E ++++L+E++ +LT E
Sbjct: 121 LSKELTAAREALSTLKPHTSAKVDDDVSIDESEDQQGLSEA----ILAKLEEKSKSLTAE 176
Query: 651 RKRRXRTLPXGLLAPXQIRXFLTLASHPGLHSXSVPGILSL 773
RK+R + LP GL ++ ASH G+HS PGI +L
Sbjct: 177 RKQRGKNLPEGLAKTEELAELKQTASHTGIHSTGTPGITAL 217
>Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical
protein C15C6.3 protein.
Length = 541
Score = 33.1 bits (72), Expect = 0.26
Identities = 21/85 (24%), Positives = 36/85 (42%)
Frame = +2
Query: 416 RIKSCTVPTRRSVSCDSPTHKGGDGGARGPRHTETAGRHCSTPSTTPHGGVSRQCGSNRH 595
R+K T+P R +S DS + G R R R + +++ G S++ +H
Sbjct: 229 RLKIATIPGARDISTDS-SDAGSSSRRRRARRRSHRSRSRTYSTSSDRGSSSKRSRQQQH 287
Query: 596 VCGRGVSSAGARHRTHAGTEAPXPH 670
+ + SS R R+ + P H
Sbjct: 288 MKRKTPSSPSRRSRSRSPPPYPPGH 312
>U97403-2|AAB52472.2| 649|Caenorhabditis elegans Hypothetical
protein T10E9.4 protein.
Length = 649
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Frame = +2
Query: 458 CDSPTHKGGDGGAR---GPRHTETAGRHCSTPSTTPHGGVSRQCGSNRHVC 601
CD T++ G G R G TE G CS+ G V N+HVC
Sbjct: 489 CDPDTNRVGILGKRHLTGEERTEVKGSACSSNKDCKSGTVCVYVNINKHVC 539
>U58746-5|AAB00625.1| 310|Caenorhabditis elegans Hypothetical
protein R05G6.4 protein.
Length = 310
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 174 SGAVFERRIIEKYIIENGVDPINGKELRVEDL 269
S +V + ++EK I +G+DPING+ + +D+
Sbjct: 251 SKSVVKYDVVEKLIKGDGIDPINGEPMSEDDI 282
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 29.1 bits (62), Expect = 4.2
Identities = 22/93 (23%), Positives = 36/93 (38%)
Frame = +2
Query: 464 SPTHKGGDGGARGPRHTETAGRHCSTPSTTPHGGVSRQCGSNRHVCGRGVSSAGARHRTH 643
S + G G+ P+ T ++ S+ T G + S VSS+ +
Sbjct: 1495 SSSTMGSTAGSSSPQPTVSSTSVPSSTGATSSGSSTTVGSSTVGATQTSVSSSTVPNTGS 1554
Query: 644 AGTEAPXPHPARXTAGTRXDQXIPHSRIASWSS 742
G+ P + T+G+ Q IP S A+ S
Sbjct: 1555 TGSTVTNPSTSSSTSGSSSTQSIPSSTAANTGS 1587
>AC025724-8|AAG23381.1| 460|Caenorhabditis elegans Hypothetical
protein Y67D8C.2 protein.
Length = 460
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +2
Query: 278 QNTTYSKAKTSKCHINPCHTEKHAR*VGRPDVTCLHTET-AVADC*TRIKSCTVPTRRSV 454
QN T++C C TE + + PD+ + +T A+ T I+S T+ +
Sbjct: 258 QNCDSMSIVTTECSKTDCETEHETQIIDSPDIDYKNEDTDAIEKETTSIESITIQEK--- 314
Query: 455 SCDSPTHK 478
SCD+ K
Sbjct: 315 SCDNENDK 322
>AL032630-1|CAA21558.1| 366|Caenorhabditis elegans Hypothetical
protein Y62H9A.1 protein.
Length = 366
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = -1
Query: 286 GVLISIRSSTLNSLPLIGSTPFSIMYFSMILLSNT 182
GVL+ I ++T +L L+ TPF F+M++L+ T
Sbjct: 264 GVLVGIPAATAMALLLMQYTPFEGFPFAMVVLAPT 298
>U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily
assigned gene nameprotein 213 protein.
Length = 1437
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -3
Query: 314 TWRFWLYYRWCFDLNKVLNSQLLAVNRIHAIFYYVL 207
+WR+W+Y +W + ++ ++ +IH YVL
Sbjct: 500 SWRYWMYSKWNLETSRHPEMHIMK-GKIHGRTKYVL 534
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,804,289
Number of Sequences: 27780
Number of extensions: 394465
Number of successful extensions: 1250
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -