Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_L13
(850 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 132 4e-31
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 132 4e-31
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 125 3e-29
At4g15460.1 68417.m02363 glycine-rich protein 33 0.32
At5g07600.1 68418.m00871 oleosin / glycine-rich protein 30 1.7
At3g11650.1 68416.m01428 harpin-induced family protein / HIN1 fa... 30 2.2
At1g61540.1 68414.m06933 kelch repeat-containing F-box family pr... 29 3.9
At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase cyc... 29 5.2
At3g28790.1 68416.m03593 expressed protein 29 5.2
At3g28470.1 68416.m03557 myb family transcription factor (MYB35)... 28 9.0
At2g23490.1 68415.m02804 hypothetical protein 28 9.0
At2g17390.1 68415.m02008 ankyrin repeat family protein contains ... 28 9.0
At2g04320.1 68415.m00427 expressed protein 28 9.0
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 132 bits (318), Expect = 4e-31
Identities = 86/229 (37%), Positives = 118/229 (51%), Gaps = 13/229 (5%)
Frame = +3
Query: 126 CAISNXXXXXXXXXXTSGAVFERRIIEKYIIENGVDPINGKELRVEDLXXXXXXXXXXXX 305
CAIS SG +FERR+IE++I + G P+ G+ L ++D+
Sbjct: 3 CAISGEVPVEPVVSTKSGLLFERRLIERHISDYGKCPVTGEPLTIDDIVPIKTGEIIKPK 62
Query: 306 XXSATSIPATLKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQHDAACRVIARLTKEV 485
SIP L + Q+EWD LML F QQL TARQELSHALYQHD+ACRVIARL KE
Sbjct: 63 TLHTASIPGLLGTFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDSACRVIARLKKER 122
Query: 486 TAAREALATLK------PQAGIA------APQAPHPTE-XXXXXXXXXXXXXDVVSRLQE 626
AR+ LA ++ P+A A +A E ++++ L +
Sbjct: 123 DEARQLLAEVERHIPAAPEAVTANAALSNGKRAAVDEELGPDAKKLCPGISAEIITELTD 182
Query: 627 RATALTQERKRRXRTLPXGLLAPXQIRXFLTLASHPGLHSXSVPGILSL 773
AL+Q+RK+ R +P L + + F L+SHP LH + PGI S+
Sbjct: 183 CNAALSQKRKK--RQIPQTLASIDTLERFTQLSSHP-LHKTNKPGICSM 228
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 132 bits (318), Expect = 4e-31
Identities = 86/229 (37%), Positives = 118/229 (51%), Gaps = 13/229 (5%)
Frame = +3
Query: 126 CAISNXXXXXXXXXXTSGAVFERRIIEKYIIENGVDPINGKELRVEDLXXXXXXXXXXXX 305
CAIS SG +FERR+IE++I + G P+ G+ L ++D+
Sbjct: 3 CAISGEVPVEPVVSTKSGLLFERRLIERHISDYGKCPVTGEPLTIDDIVPIKTGEIIKPK 62
Query: 306 XXSATSIPATLKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQHDAACRVIARLTKEV 485
SIP L + Q+EWD LML F QQL TARQELSHALYQHD+ACRVIARL KE
Sbjct: 63 TLHTASIPGLLGTFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDSACRVIARLKKER 122
Query: 486 TAAREALATLK------PQAGIA------APQAPHPTE-XXXXXXXXXXXXXDVVSRLQE 626
AR+ LA ++ P+A A +A E ++++ L +
Sbjct: 123 DEARQLLAEVERHIPAAPEAVTANAALSNGKRAAVDEELGPDAKKLCPGISAEIITELTD 182
Query: 627 RATALTQERKRRXRTLPXGLLAPXQIRXFLTLASHPGLHSXSVPGILSL 773
AL+Q+RK+ R +P L + + F L+SHP LH + PGI S+
Sbjct: 183 CNAALSQKRKK--RQIPQTLASIDTLERFTQLSSHP-LHKTNKPGICSM 228
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 125 bits (302), Expect = 3e-29
Identities = 82/230 (35%), Positives = 114/230 (49%), Gaps = 14/230 (6%)
Frame = +3
Query: 126 CAISNXXXXXXXXXXTSGAVFERRIIEKYIIENGVDPINGKELRVEDLXXXXXXXXXXXX 305
CAIS SG ++E+R+I+ +I + G P+ G+ ++D+
Sbjct: 3 CAISGEVPEEPVVSKKSGLLYEKRLIQTHISDYGKCPVTGEPHTLDDIVPIKTGKIVKPK 62
Query: 306 XXSATSIPATLKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQHDAACRVIARLTKEV 485
SIP L + Q EWD+LML F QQL TARQELSHALYQHDAACRVIARL KE
Sbjct: 63 PLHTASIPGLLGTFQTEWDSLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKER 122
Query: 486 TAAREALATLKPQAGIAAPQAPHPT--------------EXXXXXXXXXXXXXDVVSRLQ 623
+R+ LA + Q AAP+ + +V++ L
Sbjct: 123 DESRQLLAEAERQLP-AAPEVATSNAALSNGKRGIDDGEQGPNAKKMRLGISAEVITELT 181
Query: 624 ERATALTQERKRRXRTLPXGLLAPXQIRXFLTLASHPGLHSXSVPGILSL 773
+ AL+Q+RK+ R +P L + + F L+SHP LH + PGI S+
Sbjct: 182 DCNAALSQQRKK--RQIPKTLASVDALEKFTQLSSHP-LHKTNKPGIFSM 228
>At4g15460.1 68417.m02363 glycine-rich protein
Length = 148
Score = 32.7 bits (71), Expect = 0.32
Identities = 23/71 (32%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Frame = +2
Query: 452 VSCDSPTHKGGDGGARGPR--HTETAGRHCSTPSTTPHGGVSRQCGSNRHVCGRGVSSAG 625
V+C + KGG GGA G H G H S GG G G G +S G
Sbjct: 29 VNCTTVVAKGGGGGAHGGGGVHVSVGGAHASV------GGGHASGGGGHASVGGGHASGG 82
Query: 626 ARHRTHAGTEA 658
H G A
Sbjct: 83 GGHAVEGGGHA 93
>At5g07600.1 68418.m00871 oleosin / glycine-rich protein
Length = 230
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/74 (29%), Positives = 29/74 (39%)
Frame = +2
Query: 476 KGGDGGARGPRHTETAGRHCSTPSTTPHGGVSRQCGSNRHVCGRGVSSAGARHRTHAGTE 655
+ G G G E AG + G + + V G G +SAGA AGT
Sbjct: 156 QSGGGSTAGGSTPEAAGAGAGAAAAGA-GAAAAAGAAAAAVPGLGAASAGAGPGAGAGTP 214
Query: 656 APXPHPARXTAGTR 697
AP P AG++
Sbjct: 215 APAPTGKAGKAGSK 228
>At3g11650.1 68416.m01428 harpin-induced family protein / HIN1
family protein / harpin-responsive family protein /
NDR1/HIN1-like protein 2 identical to NDR1/HIN1-Like
protein 2 (GP:9502174) [Arabidopsis thaliana]; similar
to hin1 GB:CAA68848 [Nicotiana tabacum]
Length = 240
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 442 CWYSA*LNSCLAVCNCCLCVKACNI 368
C +S L SCL C CC+ CNI
Sbjct: 35 CCFSC-LGSCLRCCGCCILSLICNI 58
>At1g61540.1 68414.m06933 kelch repeat-containing F-box family
protein low similarity to SKP1 interacting partner 6
[Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 402
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 12 KKPRVESWNGFVWFHVILRLRAEFSNL*SDIIS 110
++ R E W WF ++L + + FS L +D IS
Sbjct: 367 RRDRDEIWGKVEWFDIVLSVHSSFSLLCADTIS 399
>At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 595
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = +3
Query: 123 YCAISNXXXXXXXXXXTSGAVFERRIIEKYIIENGVDPINGKELRVEDL 269
YC G+VFE I YI + G P+ G L+ EDL
Sbjct: 40 YCCALTFLPFEDPVCTIDGSVFEITTIVPYIRKFGKHPVTGAPLKGEDL 88
>At3g28790.1 68416.m03593 expressed protein
Length = 608
Score = 28.7 bits (61), Expect = 5.2
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +2
Query: 449 SVSCDSPTHKGGDGGARGPRHTETAGRHCSTPSTTPHGGVSRQCGSNRHVCGRG--VSSA 622
SVS T+KG G + +T G +PS +P G + ++ +G +SA
Sbjct: 348 SVSKTKETNKGSSGDT----YKDTTGTSSGSPSGSPSGSPTPSTSTDGKASSKGSASASA 403
Query: 623 GARHRTHAGTEA 658
GA AG A
Sbjct: 404 GASASASAGASA 415
>At3g28470.1 68416.m03557 myb family transcription factor (MYB35)
similar to Atmyb103 GB:AAD40692 from [Arabidopsis
thaliana]; contains PFAM profile: myb DNA binding domain
PF00249
Length = 317
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -1
Query: 274 SIRSSTLNSLPLIGSTPFSIMYFSMILLSNTAPDVGDTTGTSETSF 137
S S+++ + TP + Y+S LLS+ P V ++ TS+ +F
Sbjct: 216 SSSSTSITQPNQVPQTPVTNFYWSDFLLSDPVPQVVGSSATSDLTF 261
>At2g23490.1 68415.m02804 hypothetical protein
Length = 132
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Frame = -3
Query: 656 LPFLRECGGALLQTRHHVRRHACC-----SRTAC*RLRGVW 549
+P CGG++++TR +R+ C RT C +R +W
Sbjct: 33 IPKFCPCGGSIVETRKDEKRYYQCEKFKDDRTDCMHIRKLW 73
>At2g17390.1 68415.m02008 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 344
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 498 EALATLKPQAGIAAPQAPHPTE 563
E+ +T KP++G AP +P PT+
Sbjct: 22 ESKSTTKPESGSGAPPSPSPTD 43
>At2g04320.1 68415.m00427 expressed protein
Length = 118
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Frame = -3
Query: 656 LPFLRECGGALLQTRHHVRRHACC-----SRTAC*RLRGVW 549
+P CGG++++TR +R+ C RT C +R +W
Sbjct: 33 IPKFCPCGGSIVETRKDEKRYYQCEKFKDDRTDCMHIRKLW 73
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,782,695
Number of Sequences: 28952
Number of extensions: 355387
Number of successful extensions: 963
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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