Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_L12
         (886 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1165 + 31423674-31423881,31424073-31424200,31424996-314251...    31   0.93 
05_01_0277 + 2152679-2153038                                           31   1.2  
03_06_0245 - 32619410-32619510,32619698-32620668,32620694-32621169     29   5.0  
01_01_0891 + 7023383-7023700,7024627-7024705,7024888-7024951,702...    29   6.6  

>04_04_1165 +
           31423674-31423881,31424073-31424200,31424996-31425100,
           31425350-31425442,31425904-31425978,31426284-31426346,
           31426537-31426646,31426810-31426817,31426831-31426997
          Length = 318

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 494 PASQHDVSAALRPPSRHDASRGADGSPS*YDESXPIWR 607
           PA  H +S  LRPP+   A+   +GSPS  ++S  + R
Sbjct: 36  PARPHGLSLHLRPPAMASAAAAGNGSPSAPEDSTALSR 73


>05_01_0277 + 2152679-2153038
          Length = 119

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +2

Query: 425 RTGRTPFRT*WTEFRQQLGTDGSPASQHDVSAALRPPSRHDASRGADGSPS 577
           RT  +PFR   T   QQ         +H      + P RH +S  A G+PS
Sbjct: 6   RTITSPFRKARTILNQQATNTSGSIDEHHHRHRAKKPRRHSSSSSAAGTPS 56


>03_06_0245 - 32619410-32619510,32619698-32620668,32620694-32621169
          Length = 515

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 287 SGPWELQKPWSRPPAWLDERSA 352
           S PWEL K  + P  WLD+ S+
Sbjct: 239 SSPWELTKTANLPNQWLDDESS 260


>01_01_0891 +
           7023383-7023700,7024627-7024705,7024888-7024951,
           7025324-7025401,7025513-7025708,7025895-7025963,
           7026115-7026254,7026425-7026547,7027390-7027582,
           7028872-7029034,7029433-7029476,7029683-7029724
          Length = 502

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +2

Query: 314 WSRPPAWLDERSAAAYAISWTRLRTHRTSNAR 409
           W R   W DE   A YA    R+R    S AR
Sbjct: 410 WVRRGRWFDEEGRAVYAAEADRIRNWAESRAR 441


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,769,078
Number of Sequences: 37544
Number of extensions: 379300
Number of successful extensions: 863
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)